View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19500_low_2 (Length: 363)

Name: NF19500_low_2
Description: NF19500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19500_low_2
NF19500_low_2
[»] chr1 (1 HSPs)
chr1 (19-363)||(52207312-52207652)
[»] chr7 (1 HSPs)
chr7 (24-82)||(24070100-24070158)
[»] chr3 (4 HSPs)
chr3 (242-357)||(25980685-25980800)
chr3 (250-287)||(10620861-10620898)
chr3 (54-107)||(14310244-14310297)
chr3 (63-107)||(30165745-30165789)
[»] chr5 (1 HSPs)
chr5 (245-310)||(24491614-24491679)
[»] chr2 (1 HSPs)
chr2 (54-107)||(6825038-6825091)
[»] chr4 (2 HSPs)
chr4 (63-107)||(23280477-23280521)
chr4 (41-97)||(54686058-54686114)


Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 52207312 - 52207652
Alignment:
Q  19 gtccaagtttctgaaaccaccttaccaacaacttgtctcaacctattagccaacacttttgacagaattttgtacaaacaccccaccaagaataagtcga 118  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52207312 gtccaagtttctgaaaccaccttac----aacttgtctcaacctattagccaacacttttgacagaattttgtacaaacaccccaccaagaataagtcga 52207407  T
Q  119 aaatcaaccaatctcagaggattgtcaactttagaaattaatgctacaaaagtattattaattcatttagttaacttatcattcctctggaaatcatcat 218  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  52207408 aaatcaaccaatctcggaggattgccaactttagaaattaatgctacaaaagtattattaattcatttagttaacttatcattcctctggaaatcatcaa 52207507  T
Q  219 aagagtgcatcagctccacatttaaaatatcccaaaaatcctttataaaaccaagattaatgtcatccgatcctggactcctaaaactgtcatggttcca 318  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  52207508 aagagtgcatcagctccacatttaaaatatcacaaaaatcctttataaaaccaagattaatgtcatccgaccctggactcctaaaattgtcatggttcca 52207607  T
Q  319 caccatctgtttaatttcttccaacgaaaaagatttaataagatc 363  Q
     ||| ||| ||||||||||||||||||||||||||||||||||||    
T  52207608 gaccgtctctttaatttcttccaacgaaaaagatttaataagatc 52207652  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 24070158 - 24070100
Alignment:
Q  24 agtttctgaaaccaccttaccaacaacttgtctcaacctattagccaacacttttgaca 82  Q
    |||||| |||||| |||||| |||||||||||| |||||||||||| ||||||||||||    
T  24070158 agtttccgaaacccccttacaaacaacttgtcttaacctattagccgacacttttgaca 24070100  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 357
Target Start/End: Original strand, 25980685 - 25980800
Alignment:
Q  242 aaaatatcccaaaaatcctttataaaaccaagattaatgtcatccgatcctggactcctaaaactgtcatggttccacaccatctgtttaatttcttcca 341  Q
    ||||| ||||||||||| |||| |||||||| |||||| ||||||  ||| |||||| |||||||||||   | |||||||   ||||| ||||||||||    
T  25980685 aaaatgtcccaaaaatcttttacaaaaccaacattaatatcatccagtccaggactcttaaaactgtcacattcccacaccgcatgtttgatttcttcca 25980784  T
Q  342 acgaaaaagatttaat 357  Q
      | ||||||||||||    
T  25980785 ttgtaaaagatttaat 25980800  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 10620898 - 10620861
Alignment:
Q  250 ccaaaaatcctttataaaaccaagattaatgtcatccg 287  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  10620898 ccaaaaatcctttataaagccaaaattaatgtcatccg 10620861  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 14310244 - 14310297
Alignment:
Q  54 tctcaacctattagccaacacttttgacagaattttgtacaaacaccccaccaa 107  Q
    ||||||||| |||||||||||||| ||||  ||||| ||||||||||| |||||    
T  14310244 tctcaacctgttagccaacactttggacaatattttatacaaacacccaaccaa 14310297  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 30165789 - 30165745
Alignment:
Q  63 attagccaacacttttgacagaattttgtacaaacaccccaccaa 107  Q
    ||||||||| | ||||| || ||||||||||||||||||||||||    
T  30165789 attagccaataattttgccaaaattttgtacaaacaccccaccaa 30165745  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 310
Target Start/End: Original strand, 24491614 - 24491679
Alignment:
Q  245 atatcccaaaaatcctttataaaaccaagattaatgtcatccgatcctggactcctaaaactgtca 310  Q
    |||||||||||||  || ||||| |||||||||||  ||| ||||||||||||| | |||||||||    
T  24491614 atatcccaaaaatatttaataaagccaagattaattccattcgatcctggactcgtgaaactgtca 24491679  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 6825038 - 6825091
Alignment:
Q  54 tctcaacctattagccaacacttttgacagaattttgtacaaacaccccaccaa 107  Q
    ||||||||| || ||||||||||| |||| |||||| |||||||| ||||||||    
T  6825038 tctcaacctgttggccaacactttggacaaaattttatacaaacatcccaccaa 6825091  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 23280477 - 23280521
Alignment:
Q  63 attagccaacacttttgacagaattttgtacaaacaccccaccaa 107  Q
    ||||||||||| ||||| ||||||||| ||||||| |||||||||    
T  23280477 attagccaacaattttgtcagaattttatacaaactccccaccaa 23280521  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 54686058 - 54686114
Alignment:
Q  41 taccaacaacttgtctcaacctattagccaacacttttgacagaattttgtacaaac 97  Q
    |||||| ||| |||||||| ||||||||||| | ||| | |||||||||||||||||    
T  54686058 taccaataacctgtctcaatctattagccaataatttagccagaattttgtacaaac 54686114  T

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