View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19500_low_3 (Length: 270)
Name: NF19500_low_3
Description: NF19500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19500_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 32656934 - 32656684
Alignment:
| Q |
1 |
atctccggcgatgctctgttctgagaggtttaggacagagacgaagaacataagaaggtcttgtaagcgataaacggattctcatctccttctttttccg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32656934 |
atctccggcgatgctctgttctgagaggtttaggacatagacgaagaacataagaaggtcttgtaagcgataaacggattctcatctccttctttttccg |
32656835 |
T |
|
| Q |
101 |
ggcggagagttggttgctagcatcgtcctttctcttgcggcggggggttggtttcgttggtgtaatgttggtatcggcttgtattatatctaatgcttcg |
200 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32656834 |
ggcggagagttggttgctagcatcgtccttcctcttgcggcggggggttggtttcgttggtgtaatgttggtatcggcttgtattatatctaatgcttcg |
32656735 |
T |
|
| Q |
201 |
acttccattgctacccttaaggttcacgtcgagcactgtgaaacccctttt |
251 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32656734 |
acttccattgctacccttaaggttcacgtcgagcactgtgaaacccttttt |
32656684 |
T |
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