View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19500_low_4 (Length: 231)

Name: NF19500_low_4
Description: NF19500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19500_low_4
NF19500_low_4
[»] chr7 (24 HSPs)
chr7 (18-212)||(21785235-21785432)
chr7 (28-205)||(21771802-21771977)
chr7 (28-205)||(21725737-21725912)
chr7 (28-146)||(21663995-21664114)
chr7 (29-165)||(21808298-21808435)
chr7 (18-146)||(21992070-21992199)
chr7 (105-201)||(21740951-21741047)
chr7 (99-190)||(21681494-21681585)
chr7 (29-168)||(21628003-21628140)
chr7 (137-212)||(21639539-21639614)
chr7 (18-90)||(21652023-21652095)
chr7 (18-146)||(21704543-21704669)
chr7 (99-178)||(21622896-21622974)
chr7 (99-202)||(15713456-15713558)
chr7 (29-90)||(21714137-21714198)
chr7 (99-147)||(21689288-21689336)
chr7 (28-165)||(21763946-21764078)
chr7 (18-90)||(21788183-21788255)
chr7 (99-147)||(21791898-21791946)
chr7 (139-201)||(21788089-21788151)
chr7 (18-67)||(21646720-21646769)
chr7 (28-72)||(15713595-15713639)
chr7 (28-72)||(21681622-21681666)
chr7 (18-62)||(21689395-21689439)
[»] scaffold0182 (3 HSPs)
scaffold0182 (105-205)||(34375-34475)
scaffold0182 (29-86)||(25268-25325)
scaffold0182 (106-165)||(25191-25250)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 21785432 - 21785235
Alignment:
Q  18 agatactcttgcaccttttgtatctttggtcgtgaattttggggtatttgctttgaattttctagctccacaannnnnnnn-caagggtagttttggatg 116  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||| |||||    
T  21785432 agatactcttgcaccctttgtatctttggtcgtgaattttggggtatttgctttgaattttctagctccacaatttttttttcaagggtagtttgggatg 21785333  T
Q  117 ccatcattcattcaatatgataatggttgaaggatattgatcttt--caaacttgatgaaaatacaaatcaaaatgcgtattatatatagaggggctc 212  Q
     ||||||| ||||||||||||||||||| | ||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21785332 tcatcattgattcaatatgataatggttaagggatattgatctttttcaaacttgatgaaaatacaaatcaaaatgcggattatatatagaggggctc 21785235  T

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Target: chr7; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 28 - 205
Target Start/End: Complemental strand, 21771977 - 21771802
Alignment:
Q  28 gcaccttttgtatctttggtcgtgaattttggggtatttgctttgaattttctagctccacaannnnnnnncaagggtagttttggatgccatcattcat 127  Q
    ||||| |||||||||| |||| |||||||||||||||||||||||| |||| ||| |||||||          |   |||||| ||||||||||||||||    
T  21771977 gcaccctttgtatcttcggtcttgaattttggggtatttgctttgatttttgtagttccacaaatttttctttaa--tagtttcggatgccatcattcat 21771880  T
Q  128 tcaatatgataatggttgaaggatattgatctttcaaacttgatgaaaatacaaatcaaaatgcgtattatatataga 205  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21771879 tcaatatgataatggttgagggatattgatctttcaaacttgatgaaaatacaaatcaaaatgcgtattatatataga 21771802  T

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Target: chr7; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 28 - 205
Target Start/End: Complemental strand, 21725912 - 21725737
Alignment:
Q  28 gcaccttttgtatctttggtcgtgaattttggggtatttgctttgaattttctagctccacaannnnnnnncaagggtagttttggatgccatcattcat 127  Q
    ||||| |||||||||| |||| ||||||||||| |||||||||||| |||| ||| |||||||          |   |||||| ||||||||||||||||    
T  21725912 gcaccctttgtatcttcggtcttgaattttgggatatttgctttgatttttgtagttccacaaatttttctttaa--tagtttcggatgccatcattcat 21725815  T
Q  128 tcaatatgataatggttgaaggatattgatctttcaaacttgatgaaaatacaaatcaaaatgcgtattatatataga 205  Q
    ||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21725814 tcaatatgataatggttgagggaaattgatctgtcaaacttgatgaaaatacaaatcaaaatgcgtattatatataga 21725737  T

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Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 146
Target Start/End: Complemental strand, 21664114 - 21663995
Alignment:
Q  28 gcaccttttgtatctttggtcgtgaattttggggtatttgctttgaattttctagctccacaa-nnnnnnnncaagggtagttttggatgccatcattca 126  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||         |||||||||||| ||||||||||||||     
T  21664114 gcaccctttgtatctttggtcgtgaactttggggtatttgctttgaattttctagctccacaatttttttttcaagggtagtttgggatgccatcattct 21664015  T
Q  127 ttcaatatgataatggttga 146  Q
    |||||||| |||||||||||    
T  21664014 ttcaatataataatggttga 21663995  T

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Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 165
Target Start/End: Original strand, 21808298 - 21808435
Alignment:
Q  29 caccttttgtatctttggtcgtgaattttggggtatttgctttgaattttctagctccacaa-nnnnnnnncaagggtagttttggatgccatcattcat 127  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||         |||||||||||| |||| |||||||||||    
T  21808298 caccctttgtatctttggtcgtgaattttggggtatttgatttgaattttttagctccacaatctttttttcaagggtagtttgggattccatcattcat 21808397  T
Q  128 tcaatatgataatggttgaaggatattgatctttcaaa 165  Q
    ||||||| ||||||| ||| | ||||||||||| ||||    
T  21808398 tcaatataataatggctgaggaatattgatcttgcaaa 21808435  T

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Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 21992199 - 21992070
Alignment:
Q  18 agatactcttgcaccttttgtatctttggtcgtgaattttggggtatttgctttgaattttctagctccacaa-nnnnnnnncaagggtagttttggatg 116  Q
    |||||||||  |||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||         |||||| ||||| |||||    
T  21992199 agatactctgccaccctttgtatctgtgttcgtgaattttggggtatttgctttgaattttctagctccacaattttttcttcaagggaagtttgggatg 21992100  T
Q  117 ccatcattcattcaatatgataatggttga 146  Q
    |||||||||||||||||| |||||||||||    
T  21992099 ccatcattcattcaatataataatggttga 21992070  T

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Target: chr7; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 105 - 201
Target Start/End: Complemental strand, 21741047 - 21740951
Alignment:
Q  105 tagttttggatgccatcattcattcaatatgataatggttgaaggatattgatctttcaaacttgatgaaaatacaaatcaaaatgcgtattatata 201  Q
    |||||| ||||||||||||||||||||||| ||||||||||| | ||||||||| ||||||||| | ||||||| |||| |||||| || |||||||    
T  21741047 tagtttgggatgccatcattcattcaatataataatggttgaggaatattgatccttcaaacttaacgaaaatataaattaaaatgtgtgttatata 21740951  T

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Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 99 - 190
Target Start/End: Complemental strand, 21681585 - 21681494
Alignment:
Q  99 caagggtagttttggatgccatcattcattcaatatgataatggttgaaggatattgatctttcaaacttgatgaaaatacaaatcaaaatg 190  Q
    |||||||||||| ||||| ||||||||||||||| | ||||||||||| | ||||||||||||||||||| | |||| || |||||||||||    
T  21681585 caagggtagtttgggatgacatcattcattcaatgtaataatggttgaggaatattgatctttcaaacttaacgaaattataaatcaaaatg 21681494  T

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Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 168
Target Start/End: Complemental strand, 21628140 - 21628003
Alignment:
Q  29 caccttttgtatctttggtcgtgaattttggggtatttgctttgaattttctagctccacaannnnnnnncaagggtagttttggatgccatcattcatt 128  Q
    |||| |||||||||||||||||| |||| ||||| ||||||||||||||| || ||||||||          |   |||||| |||||||||||||| ||    
T  21628140 caccctttgtatctttggtcgtgcatttcggggtgtttgctttgaattttttaactccacaaatttttctttaa--tagtttgggatgccatcattcttt 21628043  T
Q  129 caatatgataatggttgaaggatattgatctttcaaactt 168  Q
    |||||| ||||||||||| | |||||||||||||||||||    
T  21628042 caatataataatggttgaggaatattgatctttcaaactt 21628003  T

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Target: chr7; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 21639614 - 21639539
Alignment:
Q  137 taatggttgaaggatattgatctttcaaacttgatgaaaatacaaatcaaaatgcgtattatatatagaggggctc 212  Q
    |||||||||| ||||||||||||||||||||| | ||||| | |||||||||||||||||| ||||||| ||||||    
T  21639614 taatggttgagggatattgatctttcaaacttaacgaaaacataaatcaaaatgcgtattacatatagatgggctc 21639539  T

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Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 21652095 - 21652023
Alignment:
Q  18 agatactcttgcaccttttgtatctttggtcgtgaattttggggtatttgctttgaattttctagctccacaa 90  Q
    ||||||| | ||||| ||||||||||||||||||||||||||||| |||||||||| |||| ||| |||||||    
T  21652095 agatactgtggcaccctttgtatctttggtcgtgaattttggggtgtttgctttgatttttgtagttccacaa 21652023  T

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Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 21704669 - 21704543
Alignment:
Q  18 agatactcttgcaccttttgtatctttggtcgtgaattttggggtatttgctttgaattttctagctccacaannnnnnnncaagggtagttttggatgc 117  Q
    ||||||||||||||| |||||||||||||||||| |||| | ||| ||||||||||||||| || ||| ||||          |   |||||| ||||||    
T  21704669 agatactcttgcaccctttgtatctttggtcgtgcatttggaggtgtttgctttgaattttttaactcgacaaatttttcttta--atagtttgggatgc 21704572  T
Q  118 catcattcattcaatatgataatggttga 146  Q
    ||||||||||||||||| |||||||||||    
T  21704571 catcattcattcaatataataatggttga 21704543  T

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Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 21622974 - 21622896
Alignment:
Q  99 caagggtagttttggatgccatcattcattcaatatgataatggttgaagg--atattgatctttcaaacttgatgaaaata 178  Q
    |||||||||||| |||||||||||||||||||||   ||||||||||| ||  ||||||||||||||||||| | |||||||    
T  21622974 caagggtagtttgggatgccatcattcattcaat---ataatggttgagggatatattgatctttcaaacttaacgaaaata 21622896  T

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Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 99 - 202
Target Start/End: Complemental strand, 15713558 - 15713456
Alignment:
Q  99 caagggtagttttggatgccatcattcattcaatatgataatggttgaaggatattgatctttcaaacttgatgaaaatacaaatcaaaatgcgtattat 198  Q
    ||||||||||||  |||||||||||||||||| ||| || |||||||| ||||||||||||| ||||  | | |||| ||  |||||||||||| |||||    
T  15713558 caagggtagtttgcgatgccatcattcattcattataatcatggttgagggatattgatcttgcaaa-gtcacgaaattatgaatcaaaatgcggattat 15713460  T
Q  199 atat 202  Q
    ||||    
T  15713459 atat 15713456  T

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Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 21714198 - 21714137
Alignment:
Q  29 caccttttgtatctttggtcgtgaattttggggtatttgctttgaattttctagctccacaa 90  Q
    |||| |||||||||| |||||||||||||||||| ||||| |||| |||| |||||||||||    
T  21714198 caccctttgtatcttcggtcgtgaattttggggtgtttgcattgatttttgtagctccacaa 21714137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 21689336 - 21689288
Alignment:
Q  99 caagggtagttttggatgccatcattcattcaatatgataatggttgaa 147  Q
    ||||||||| || ||||||||||||||||||||||| ||||||||||||    
T  21689336 caagggtaggttgggatgccatcattcattcaatataataatggttgaa 21689288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 21764078 - 21763946
Alignment:
Q  28 gcaccttttgtatctttggtcgtgaattttggggtatttgctttgaattttctagctccacaannnnnnnncaagggtagttttggatgccatcattcat 127  Q
    ||||| |||||||||| |||||||||||||||||| ||||||||||   || |||||||||||          | |  ||||| ||||||||||||||||    
T  21764078 gcaccctttgtatcttgggtcgtgaattttggggtgtttgctttga---ttgtagctccacaaatttttctttaag--agtttgggatgccatcattcat 21763984  T
Q  128 tcaatatgataatggttgaaggatattgatctttcaaa 165  Q
    ||||||   |||||||||| ||||||||||||| ||||    
T  21763983 tcaatacactaatggttgagggatattgatcttgcaaa 21763946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 21788255 - 21788183
Alignment:
Q  18 agatactcttgcaccttttgtatctttggtcgtgaattttggggtatttgctttgaattttctagctccacaa 90  Q
    |||||||||  |||| ||||||| || |||||||||||||||||| |||||||||| |||| || ||||||||    
T  21788255 agatactctgccaccctttgtattttcggtcgtgaattttggggtgtttgctttgatttttgtaactccacaa 21788183  T

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Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 21791946 - 21791898
Alignment:
Q  99 caagggtagttttggatgccatcattcattcaatatgataatggttgaa 147  Q
    ||||||||| || ||||||||||||||||||||||| ||||||||||||    
T  21791946 caagggtaggttgggatgccatcattcattcaatataataatggttgaa 21791898  T

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Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 21788151 - 21788089
Alignment:
Q  139 atggttgaaggatattgatctttcaaacttgatgaaaatacaaatcaaaatgcgtattatata 201  Q
    ||||||||  |||||||||||||||||||| | ||||||  ||||||||||| ||||||||||    
T  21788151 atggttgagagatattgatctttcaaacttaacgaaaatgtaaatcaaaatgtgtattatata 21788089  T

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Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 21646769 - 21646720
Alignment:
Q  18 agatactcttgcaccttttgtatctttggtcgtgaattttggggtatttg 67  Q
    ||||||| | ||||| ||||||||||||||||||||||||||||| ||||    
T  21646769 agatactgtggcaccctttgtatctttggtcgtgaattttggggtgtttg 21646720  T

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Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 15713639 - 15713595
Alignment:
Q  28 gcaccttttgtatctttggtcgtgaattttggggtatttgctttg 72  Q
    ||||| |||||||||||||||||||| |||||||| |||||||||    
T  15713639 gcaccctttgtatctttggtcgtgaactttggggtgtttgctttg 15713595  T

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Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 21681666 - 21681622
Alignment:
Q  28 gcaccttttgtatctttggtcgtgaattttggggtatttgctttg 72  Q
    ||||| ||||||||||||||||||||||||||||| |||| ||||    
T  21681666 gcaccctttgtatctttggtcgtgaattttggggtgtttgatttg 21681622  T

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Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 21689439 - 21689395
Alignment:
Q  18 agatactcttgcaccttttgtatctttggtcgtgaattttggggt 62  Q
    ||||||||||||||| |||||||||||||||||||| ||| ||||    
T  21689439 agatactcttgcaccctttgtatctttggtcgtgaactttcgggt 21689395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 105 - 205
Target Start/End: Complemental strand, 34475 - 34375
Alignment:
Q  105 tagttttggatgccatcattcattcaatatgataatggttgaaggatattgatctttcaaacttgatgaaaatacaaatcaaaatgcgtattatatatag 204  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34475 tagtttcggatgccatcattcattcaatatgataatggttgagggaaattgatctgtcaaacttgatgaaaatacaaatcaaaatgcgtattatatatag 34376  T
Q  205 a 205  Q
    |    
T  34375 a 34375  T

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Target: scaffold0182; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 25325 - 25268
Alignment:
Q  29 caccttttgtatctttggtcgtgaattttggggtatttgctttgaattttctagctcc 86  Q
    |||| |||||||||| ||| |||||||||||||| |||||||||| |||| |||||||    
T  25325 caccctttgtatcttgggtggtgaattttggggtgtttgctttgatttttgtagctcc 25268  T

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Target: scaffold0182; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 165
Target Start/End: Complemental strand, 25250 - 25191
Alignment:
Q  106 agttttggatgccatcattcattcaatatgataatggttgaaggatattgatctttcaaa 165  Q
    ||||| || |||||||||||||||||||   |||||||||| ||||||||||||| ||||    
T  25250 agtttgggctgccatcattcattcaatacactaatggttgagggatattgatcttgcaaa 25191  T

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