View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19500_low_5 (Length: 220)

Name: NF19500_low_5
Description: NF19500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19500_low_5
NF19500_low_5
[»] chr7 (30 HSPs)
chr7 (10-220)||(21689180-21689390)
chr7 (10-190)||(21791790-21791970)
chr7 (10-107)||(21627899-21627996)
chr7 (10-95)||(21991524-21991609)
chr7 (10-88)||(21681400-21681478)
chr7 (10-76)||(21791512-21791578)
chr7 (22-91)||(21622830-21622899)
chr7 (10-95)||(21651859-21651944)
chr7 (10-88)||(21639468-21639546)
chr7 (10-173)||(21663875-21664049)
chr7 (10-95)||(21704425-21704508)
chr7 (10-76)||(21788002-21788068)
chr7 (14-82)||(21713980-21714048)
chr7 (123-181)||(21808354-21808412)
chr7 (119-166)||(21992070-21992117)
chr7 (119-156)||(21704543-21704580)
chr7 (119-156)||(21741006-21741043)
chr7 (10-47)||(21771759-21771796)
chr7 (10-47)||(21785163-21785200)
chr7 (119-191)||(21681538-21681610)
chr7 (119-190)||(15713511-15713582)
chr7 (128-166)||(21622936-21622974)
chr7 (119-156)||(21628025-21628062)
chr7 (10-47)||(21725694-21725731)
chr7 (121-156)||(21651971-21652006)
chr7 (119-153)||(21725796-21725830)
chr7 (119-153)||(21771861-21771895)
chr7 (119-156)||(21763965-21764002)
chr7 (191-220)||(21791959-21791988)
chr7 (11-47)||(21740895-21740931)
[»] scaffold0182 (2 HSPs)
scaffold0182 (10-47)||(34332-34369)
scaffold0182 (119-153)||(34434-34468)


Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 21689180 - 21689390
Alignment:
Q  10 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagcatgaaaatctaaagcactacactgagcccatattatattatatatgcattag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21689180 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagcatgaaaatctaaagcactacactgagcccatattatattatatatgcattag 21689279  T
Q  110 gtaaaagtttcaaccattattatattgaatgaatgatggcatcccaacctacccttgtaaaaaaggttgtggggttacaaatggagctacaaaggtacat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21689280 gtaaaagtttcaaccattattatattgaatgaatgatggcatcccaacctacccttgtaaaaaaggttgtggggttacaaatggagctacaaaggtacat 21689379  T
Q  210 agatacaaatc 220  Q
    |||||||||||    
T  21689380 agatacaaatc 21689390  T

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Target: chr7; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 10 - 190
Target Start/End: Original strand, 21791790 - 21791970
Alignment:
Q  10 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagcatgaaaatctaaagcactacactgagcccatattatattatatatgcattag 109  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21791790 aagcaagcatatttacttatcttgttcagtaggtaaaggtttgaaagcatgaaaatctaaagcactacactgagcccatattatattatatatgcattag 21791889  T
Q  110 gtaaaagtttcaaccattattatattgaatgaatgatggcatcccaacctacccttgtaaaaaaggttgtggggttacaaa 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| | ||||||    
T  21791890 gtaaaagtttcaaccattattatattgaatgaatgatggcatcccaacctacccttgaaagaaaagttgtggagctacaaa 21791970  T

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Target: chr7; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 21627899 - 21627996
Alignment:
Q  10 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagcatgaaaatctaaagcactacactgagcccatattatattatatatgcatt 107  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  21627899 aagcaagcatatttacttatcttgctcattaggtaaaggtttgagagcatgaaaatctaaagcactacactgagaccatattatataatatatgcatt 21627996  T

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Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 21991524 - 21991609
Alignment:
Q  10 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagcatgaaaatctaaagcactacactgagcccatattatat 95  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||| ||||    
T  21991524 aagcaagcatatttacttatcttgttcattaggtaaaggttcgagagaatgaaaatctaaagcactacactgaacccatataatat 21991609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 21681400 - 21681478
Alignment:
Q  10 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagcatgaaaatctaaagcactacactgagcccat 88  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  21681400 aagcaagcatatttacttatcttgtttattaggtaaaggtttgagagcatgaaaaactaaagcactaccctgagcccat 21681478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 21791512 - 21791578
Alignment:
Q  10 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagcatgaaaatctaaagcacta 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21791512 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagcatgaaaatctaaagcacta 21791578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 21622830 - 21622899
Alignment:
Q  22 ttacttatcttgttcattaggtaaaggtttgagagcatgaaaatctaaagcactacactgagcccatatt 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21622830 ttacttatcttgttcattaggtaaaggtttgagagcatgaaaatctaaagcactacactgagcctatatt 21622899  T

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Target: chr7; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 21651859 - 21651944
Alignment:
Q  10 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagcatgaaaatctaaagcactacactgagcccatattatat 95  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||||    
T  21651859 aagcaagcatatttacttatcttgttaattaggtaaaggtttgtgagcatggaaatctagagcactacactgagccaatattatat 21651944  T

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Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 21639468 - 21639546
Alignment:
Q  10 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagcatgaaaatctaaagcactacactgagcccat 88  Q
    |||||||||||||||||||||||||||||||||||||| ||  ||||||||||||| ||||||||||||||||||||||    
T  21639468 aagcaagcatatttacttatcttgttcattaggtaaagtttcaagagcatgaaaatttaaagcactacactgagcccat 21639546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 173
Target Start/End: Original strand, 21663875 - 21664049
Alignment:
Q  10 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagcatgaaaatctaaagcactacactgagcccatattatattatat------atg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |  |||||| |||||| |||| |||||||||||||||| ||||      ||     
T  21663875 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagaaaaaaaatccaaagcagtacagtgagcccatattatataatattatataata 21663974  T
Q  104 ca---ttaggtaaaagtt--tcaaccattattatattgaatgaatgatggcatcccaacctacccttgtaaaaaa 173  Q
    ||   || | |  || ||  |||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||    
T  21663975 cacgttttgatttaaattcctcaaccattattatattgaaagaatgatggcatcccaaactacccttgaaaaaaa 21664049  T

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Target: chr7; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 21704425 - 21704508
Alignment:
Q  10 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagcatgaaaatctaaagcactacactgagcccatattatat 95  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||||||||| |||||||||||||||||    
T  21704425 aagcaagcatatttagttatcttgttcattaggtaaaggtttgaga--atgaaaaactaaagcactacgctgagcccatattatat 21704508  T

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Target: chr7; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 21788002 - 21788068
Alignment:
Q  10 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagcatgaaaatctaaagcacta 76  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21788002 aagcaagcatatttagttatcttgttcattaggtaaaggtttgagagcatgaaaaactaaagcacta 21788068  T

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Target: chr7; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 21713980 - 21714048
Alignment:
Q  14 aagcatatttacttatcttgttcattaggtaaaggtttgagagcatgaaaatctaaagcactacactga 82  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21713980 aagcagatttacttaacttgttcattaggtaaaggtttgagagcatgaaaatttaaagcactacactga 21714048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 21808412 - 21808354
Alignment:
Q  123 ccattattatattgaatgaatgatggcatcccaacctacccttgtaaaaaaggttgtgg 181  Q
    |||||||||||||||||||||||||| ||||||| ||||||||| ||||||| ||||||    
T  21808412 ccattattatattgaatgaatgatggaatcccaaactacccttgaaaaaaagattgtgg 21808354  T

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Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 21992070 - 21992117
Alignment:
Q  119 tcaaccattattatattgaatgaatgatggcatcccaacctacccttg 166  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||    
T  21992070 tcaaccattattatattgaatgaatgatggcatcccaaacttcccttg 21992117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 21704543 - 21704580
Alignment:
Q  119 tcaaccattattatattgaatgaatgatggcatcccaa 156  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21704543 tcaaccattattatattgaatgaatgatggcatcccaa 21704580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 21741006 - 21741043
Alignment:
Q  119 tcaaccattattatattgaatgaatgatggcatcccaa 156  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21741006 tcaaccattattatattgaatgaatgatggcatcccaa 21741043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 21771759 - 21771796
Alignment:
Q  10 aagcaagcatatttacttatcttgttcattaggtaaag 47  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21771759 aagcaagcatatttacttatcttgttcattaggtaaag 21771796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 21785163 - 21785200
Alignment:
Q  10 aagcaagcatatttacttatcttgttcattaggtaaag 47  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21785163 aagcaagcatatttacttatcttgttcattaggtaaag 21785200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 21681538 - 21681610
Alignment:
Q  119 tcaaccattattatattgaatgaatgatggcatcccaacctacccttgtaaaaaaggttgtggggttacaaat 191  Q
    ||||||||||||| ||||||||||||||| |||||||| ||||||||| | ||||  |||||| | |||||||    
T  21681538 tcaaccattattacattgaatgaatgatgtcatcccaaactacccttgaagaaaatattgtggagctacaaat 21681610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 15713511 - 15713582
Alignment:
Q  119 tcaaccattattatattgaatgaatgatggcatcccaacctacccttgtaaaaaaggttgtggggttacaaa 190  Q
    |||||||| |||||| |||||||||||||||||| ||| ||||||||| ||||||  |||||| | ||||||    
T  15713511 tcaaccatgattataatgaatgaatgatggcatcgcaaactacccttgaaaaaaaaattgtggagctacaaa 15713582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 166
Target Start/End: Original strand, 21622936 - 21622974
Alignment:
Q  128 attatattgaatgaatgatggcatcccaacctacccttg 166  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  21622936 attatattgaatgaatgatggcatcccaaactacccttg 21622974  T

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Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 21628025 - 21628062
Alignment:
Q  119 tcaaccattattatattgaatgaatgatggcatcccaa 156  Q
    |||||||||||||||||||| |||||||||||||||||    
T  21628025 tcaaccattattatattgaaagaatgatggcatcccaa 21628062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 21725694 - 21725731
Alignment:
Q  10 aagcaagcatatttacttatcttgttcattaggtaaag 47  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  21725694 aagcacgcatatttacttatcttgttcattaggtaaag 21725731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 156
Target Start/End: Original strand, 21651971 - 21652006
Alignment:
Q  121 aaccattattatattgaatgaatgatggcatcccaa 156  Q
    ||||||||||||||||| ||||||||||||||||||    
T  21651971 aaccattattatattgattgaatgatggcatcccaa 21652006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 153
Target Start/End: Original strand, 21725796 - 21725830
Alignment:
Q  119 tcaaccattattatattgaatgaatgatggcatcc 153  Q
    ||||||||||| |||||||||||||||||||||||    
T  21725796 tcaaccattatcatattgaatgaatgatggcatcc 21725830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 153
Target Start/End: Original strand, 21771861 - 21771895
Alignment:
Q  119 tcaaccattattatattgaatgaatgatggcatcc 153  Q
    ||||||||||| |||||||||||||||||||||||    
T  21771861 tcaaccattatcatattgaatgaatgatggcatcc 21771895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 21763965 - 21764002
Alignment:
Q  119 tcaaccattattatattgaatgaatgatggcatcccaa 156  Q
    |||||||||| | |||||||||||||||||||||||||    
T  21763965 tcaaccattagtgtattgaatgaatgatggcatcccaa 21764002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 191 - 220
Target Start/End: Original strand, 21791959 - 21791988
Alignment:
Q  191 tggagctacaaaggtacatagatacaaatc 220  Q
    ||||||||||||||||||||||||||||||    
T  21791959 tggagctacaaaggtacatagatacaaatc 21791988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 21740895 - 21740931
Alignment:
Q  11 agcaagcatatttacttatcttgttcattaggtaaag 47  Q
    |||||||||||||||||||||| |||| |||||||||    
T  21740895 agcaagcatatttacttatcttcttcaataggtaaag 21740931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 34332 - 34369
Alignment:
Q  10 aagcaagcatatttacttatcttgttcattaggtaaag 47  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  34332 aagcacgcatatttacttatcttgttcattaggtaaag 34369  T

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Target: scaffold0182; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 153
Target Start/End: Original strand, 34434 - 34468
Alignment:
Q  119 tcaaccattattatattgaatgaatgatggcatcc 153  Q
    ||||||||||| |||||||||||||||||||||||    
T  34434 tcaaccattatcatattgaatgaatgatggcatcc 34468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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