View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19501_low_2 (Length: 359)
Name: NF19501_low_2
Description: NF19501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19501_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 26 - 348
Target Start/End: Original strand, 28611389 - 28611703
Alignment:
| Q |
26 |
gccatctatggttctcttttaagatgaaaagaaaagatgaagnnnnnnnnnnnncatggaaaggtgtaagcttaattgcagtattttcccaannnnnnnn |
125 |
Q |
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| T |
28611389 |
gccatctatggttctcttttaagatgaaaagaaaagatgaa---aaaaaaaaaacatggaaaggtgtaagcttaattgcagtattttcccaattttttt- |
28611484 |
T |
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| Q |
126 |
caaaacattgaaagcttggtgctagctatcaatgatttcttacatgtatttattcttcttatttgttgttgcttgatagcttggtgttatagctttaaca |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28611485 |
caaaacattgaaagcttggtgctagctatcaatgatttcttacatgtatatattcttcttatttgttgttgcttgatagcttggtgttatagc-ttaaca |
28611583 |
T |
|
| Q |
226 |
tgctatcaagcacgacacttgacacgtcgacacccctataataacttgagaaaatcaaatctcctcttccccacaagctgcataatcctcctcaaatgta |
325 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28611584 |
tgctatcaagcacgacacttgacacgtcgacacctctataataatttgagaaaatcaaatctcctcttccccacaagctgcataa---tcctcaaatgta |
28611680 |
T |
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| Q |
326 |
aacatcttgatgacgctgttcat |
348 |
Q |
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||||||||||||| ||||||||| |
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| T |
28611681 |
aacatcttgatgatgctgttcat |
28611703 |
T |
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