View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19501_low_3 (Length: 344)
Name: NF19501_low_3
Description: NF19501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19501_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 34952526 - 34952738
Alignment:
| Q |
1 |
cattttccaacaaatccaatccatttgttttcacaatttgtctctggatgtaactgtagttcacaattgtatcctgttgaaaatcctacgttcccatatg |
100 |
Q |
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| T |
34952526 |
cattttccaacaaatccaatccatttgttttcacaatttgtctctggatgcaactgtagttcacaactgtatcctgttgaaaatcctacgttcccatatg |
34952625 |
T |
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| Q |
101 |
cactttttaccacacacatgcacccaaaagatacatatacaaatgatcaacttgagattcaaatgagacaactgtatattaggccgtcttgtaaaataaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
34952626 |
cactttttaccacacacatgcacccaaaagatacatatacaaatgattaacttgagattgaaatgagacaactgtatattagaccgtcttgtaaaataaa |
34952725 |
T |
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| Q |
201 |
attatttaaacac |
213 |
Q |
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||||||||||||| |
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| T |
34952726 |
attatttaaacac |
34952738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 34970381 - 34970502
Alignment:
| Q |
1 |
cattttccaacaaatccaatccatttgttttcacaatttgtctctggatgtaactgtagttcacaattgtatcctgttgaaaatcctacgttcccatatg |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| ||| |||||||| ||||||| | | |||||||||||| ||||| | |
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| T |
34970381 |
catttcccaacaaatccaatccatttgttttcacaatttatctctagatgtaattgtcgttcacaactgtatcccatagtaaatcctacgtttccatacg |
34970480 |
T |
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| Q |
101 |
cactttttaccacacacatgca |
122 |
Q |
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|||| ||||||| ||||||||| |
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| T |
34970481 |
cactgtttaccatacacatgca |
34970502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 35029678 - 35029781
Alignment:
| Q |
1 |
cattttccaacaaatccaatccatttgttttcacaatttgtctctggatgtaactgtagttcacaattgtatcctgttgaaaatcctacgttcccatatg |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||| |||| |||| |||||| |||||||| ||||||| | | ||||||||||||| ||||| |
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| T |
35029678 |
cattttccaacaaatccaatccacttgttttcacaatttgcctctcgatgcaactgtcgttcacaactgtatcccatagtaaatcctacgttctgatatg |
35029777 |
T |
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| Q |
101 |
cact |
104 |
Q |
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|||| |
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| T |
35029778 |
cact |
35029781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 265 - 344
Target Start/End: Original strand, 34952786 - 34952864
Alignment:
| Q |
265 |
gataatagctttcttataaccatgaacaattttttctttgacacnnnnnnncaatattgcactatatgtatagtcataaa |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34952786 |
gataatagctttcttataaccatgaacaattttttctttgacac-aaaaaacaatattgcactatatgtatagtcataaa |
34952864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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