View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19502_low_1 (Length: 746)
Name: NF19502_low_1
Description: NF19502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19502_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 708; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 708; E-Value: 0
Query Start/End: Original strand, 3 - 730
Target Start/End: Complemental strand, 2488953 - 2488226
Alignment:
| Q |
3 |
atggaatgatcagttttccatttctgtattcaggctctttgttcttcattaaatgatacgaaattgctgacacgataatctcttctatatagttactgag |
102 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2488953 |
atggaatgatcagttttccatttctgtattcaggctctttgttcttcattatatgatacgaaattgctgacacgataatctcttctatatagttactgag |
2488854 |
T |
|
| Q |
103 |
aaccattgtgtctgctacacagatggaatccaggtcatgacaatcaagatcattggctgctaacacttccatgatatggttcttgttatcttgaatctgt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2488853 |
aaccattgtgtctgctacacagatggaatccaggtcatgacaatcaagatcattggctgctaacacttccatgatatggttcttgttatcttgaatctgt |
2488754 |
T |
|
| Q |
203 |
atcttcttcatatccgcttcaaattgagacttccagctgacaagacgagattcatcttctggtggtttgatttctatgttgtaagggaagagagaggtaa |
302 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2488753 |
atcttcttcatatccgcttcaaattgagacttccagctgacaagacgagattcatcttctggtggtttgatttctatgttgtaagggaagagagaggtaa |
2488654 |
T |
|
| Q |
303 |
gcatctcatctactcttttgcattcattaccagaatccaaaatccgcgaaccaataatcaaaattggtccagatagtttcgttaacattgtctggaatag |
402 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2488653 |
gcatctcatctactcttttgcattcattaccagaatccaaaatccgcgaaccaataatcaaaattggtccagatagtttcgttaacattgtctggaatag |
2488554 |
T |
|
| Q |
403 |
tttatatatcctttgtgatctacacaacaacttatcagcatcccgcagatatagaacaatgggataggtctttgacacataaagtagaacctgcaagtga |
502 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2488553 |
tttatatatcctttgtgatctacacaacaacttatcagcatcccgcatatatagaacaatgggataggtctttgacacataaagtagaacctgcaagtga |
2488454 |
T |
|
| Q |
503 |
attttccaatcatcaaatcaatgtcttttgttgagatgtatagccttactatccaaaacacgtttatgtgctgatgctgaaatctgtgatactatcaaaa |
602 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
2488453 |
attttccaatcatcaaatcaatgtcttttgttgagatgtatagccttactatccaaaacacatttatgtgctgatgctgaaatctgtgatactatcaaaa |
2488354 |
T |
|
| Q |
603 |
gtgacaataccttgtaaagagtctgtataagaatcttctcatcaaaaggccagctggttatgtgtttcccaggagctaaaggaatattgaaggatacaag |
702 |
Q |
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| T |
2488353 |
gtgacaataccttgtaaagagtctgtataagaatcttctcatcaaaaggccagccggttatgtgtttcccaggagctgaaggaatattgaaggatacaag |
2488254 |
T |
|
| Q |
703 |
gaatcagaagcgagaacaatgtccaaaa |
730 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
2488253 |
gaatcagaagcgagaacaatgtccaaaa |
2488226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 176; Significance: 2e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 11 - 530
Target Start/End: Original strand, 41592228 - 41592747
Alignment:
| Q |
11 |
atcagttttccatttctgtattcaggctctttgttcttcattaaatgatacgaaattgctgacacgataatctcttctatatagttactgagaaccattg |
110 |
Q |
| |
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||||| || |||||||||||||| | |||||||| ||||| ||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
41592228 |
atcagcttcccatttctgtattcgaggtctttgtttttcatcaaatgatgagagattgctgacacaataatctcttctatatagttactgagaaccattg |
41592327 |
T |
|
| Q |
111 |
tgtctgctacacagatggaatccaggtcatgacaatcaagatcattggctgctaacacttccatgatatggttcttgttatcttgaatctgtatcttctt |
210 |
Q |
| |
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||||| | |||||||||||||||| ||||| |||||||||||||||||||| | ||||||| | ||||| || || ||||| |||| |||||| |||| |
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| T |
41592328 |
tgtcttccacacagatggaatccaagtcatcgcaatcaagatcattggctgcaagcacttccgtaatatgatttttattatcctgaacttgtatcatctt |
41592427 |
T |
|
| Q |
211 |
catatccgcttcaaattgagacttccagctgacaagacgagattcatcttctggtggtttgatttctatgttgtaagggaagagagaggtaagcatctca |
310 |
Q |
| |
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||||||| |||| ||||| |||||||||||||| ||| | ||||||||||| || ||| |||||||||| | ||| |||||||| ||||| ||||| |
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| T |
41592428 |
catatcctcttccaattgtgacttccagctgacgagatgtgattcatcttccggaggtctgatttctatatcgtacgggaagagcacagtaagtttctca |
41592527 |
T |
|
| Q |
311 |
tctactcttttgcattcattaccagaatccaaaatccgcgaaccaataatcaaaattggtccagatagtttcgttaacattgtctggaatagtttatata |
410 |
Q |
| |
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|| | | || |||||||||||||||| | || |||||||||| ||||| ||| |||||||| ||| || | |||||| | ||||| | ||||||| |
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| T |
41592528 |
tccaattcttcaaattcattaccagaatctagaactcgcgaaccaagaatcagaatcggtccagagagtctcttcaacattttttggaacatgttatata |
41592627 |
T |
|
| Q |
411 |
tcctttgtgatctacacaacaacttatcagcatcccgcagatatagaacaatgggataggtctttgacacataaagtagaacctgcaagtgaattttcca |
510 |
Q |
| |
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|| ||||||||||| | || ||| ||||| |||||| ||||||||| ||||||||||| || ||||||||| |||||||||||||||||| || |||| |
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| T |
41592628 |
tcttttgtgatctagataataacctatcaacatccctcagatatagcacaatgggataagtttttgacacagaaagtagaacctgcaagtaaaacgtcca |
41592727 |
T |
|
| Q |
511 |
atcatcaaatcaatgtcttt |
530 |
Q |
| |
|
|| | |||||| |||||||| |
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| T |
41592728 |
attaccaaatccatgtcttt |
41592747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 606 - 659
Target Start/End: Original strand, 41592825 - 41592878
Alignment:
| Q |
606 |
acaataccttgtaaagagtctgtataagaatcttctcatcaaaaggccagctgg |
659 |
Q |
| |
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||| |||||||||||||| ||||||||||| || |||||||||| |||||||| |
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| T |
41592825 |
acagtaccttgtaaagagactgtataagaagtttttcatcaaaagaccagctgg |
41592878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 84 - 189
Target Start/End: Original strand, 8842865 - 8842970
Alignment:
| Q |
84 |
cttctatatagttactgagaaccattgtgtctgctacacagatggaatccaggtcatgacaatcaagatcattggctgctaacacttccatgatatggtt |
183 |
Q |
| |
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||||||| ||||||| |||||||||||||| ||||||||||||||||| | ||||||| |||||||| ||||||||| | ||||||||||||||||| |
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| T |
8842865 |
cttctatgtagttacaaagaaccattgtgtccgctacacagatggaatcaatgtcatgaatatcaagataattggctgcaaggacttccatgatatggtt |
8842964 |
T |
|
| Q |
184 |
cttgtt |
189 |
Q |
| |
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|||||| |
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|
| T |
8842965 |
cttgtt |
8842970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 32248412 - 32248453
Alignment:
| Q |
116 |
gctacacagatggaatccaggtcatgacaatcaagatcattg |
157 |
Q |
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| T |
32248412 |
gctacacagatggaatccaggtcatgacaatcgagatcattg |
32248453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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