View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19502_low_2 (Length: 374)

Name: NF19502_low_2
Description: NF19502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19502_low_2
NF19502_low_2
[»] chr6 (6 HSPs)
chr6 (1-359)||(16872968-16873326)
chr6 (1-332)||(16579649-16579986)
chr6 (1-332)||(16615394-16615731)
chr6 (4-140)||(16571075-16571212)
chr6 (284-344)||(16571367-16571426)
chr6 (284-351)||(17006902-17006969)
[»] chr2 (5 HSPs)
chr2 (235-359)||(21627543-21627676)
chr2 (1-226)||(32791118-32791341)
chr2 (235-359)||(32791392-32791525)
chr2 (5-140)||(236379-236514)
chr2 (235-285)||(236194-236244)
[»] chr1 (2 HSPs)
chr1 (5-140)||(7389291-7389426)
chr1 (235-285)||(7389561-7389611)
[»] chr7 (2 HSPs)
chr7 (5-140)||(48300805-48300940)
chr7 (237-285)||(48300620-48300668)
[»] scaffold0256 (6 HSPs)
scaffold0256 (160-237)||(14803-14880)
scaffold0256 (284-353)||(14629-14698)
scaffold0256 (284-344)||(12293-12353)
scaffold0256 (7-68)||(14937-14998)
scaffold0256 (4-90)||(12545-12631)
scaffold0256 (107-140)||(14898-14931)


Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 16872968 - 16873326
Alignment:
Q  1 atgttggtcattctcgatattcttgtgcaatatccaaacataaatgttgatgattcagaggagccagatgagaatgaaactaagaaaggggacgaaaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||    
T  16872968 atgttggtcattctcgatattcttgtgcaatatccaaacataaatgttgatgattcagaggagccagatgagaatgaaactaagaaaggggccgactata 16873067  T
Q  101 atggatcgattcgtgtttggggaaacttagttgctttcttnnnnnnnnnnntgaggctgagtttttcaagagcctgcaatgcatagatcctcagacacgc 200  Q
    | |||||||||||||||||||||||||||||| |||||||           |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16873068 acggatcgattcgtgtttggggaaacttagtttctttcttaaaaaaaaaaatgaggctgagtttttcaagagcctgcaatgcatagatcctcacacacgc 16873167  T
Q  201 gagtatattgagaggctccaggatgagccaatgtttggagatttcaaaggttctttaaaggttgccttgatgagggttgaactcaaacctcaagaggttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16873168 gagtatattgagaggctccaggatgagccaatgtttggagatttcaaaggttctttaaaggttaccttgatgagggttgaactcaaacctcaagaggttt 16873267  T
Q  301 atgatgcattgagaacattggttgagccggagaacagcaggaccttaatggatggatta 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16873268 atgatgcattgagaacattggttgagccggagaacagcaggaccttaatggatggatta 16873326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 16579649 - 16579986
Alignment:
Q  1 atgttggtcattctcgatattcttgtgcaatatccaaacataaatgttgatgattcagaggagccagatgagaatgaaactaagaaaggggacgaaaata 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||  |||    
T  16579649 atgttggtcattctcgatattcttgtgcagtatccaaacataaatgttgatgattcagaggagccatatgagagtgaaactaagaaaggggccgactata 16579748  T
Q  101 atggatcgattcgtgtttggggaaacttagttgctttcttnnnnnnnnnnntgaggctgagtttttcaagagcctgcaatgcatagatcctcagacacgc 200  Q
    | | || |||||||||||||||||||||||||||||||||           ||| |||||||| ||||||||||||||||||||||||||||| ||| ||    
T  16579749 acgtattgattcgtgtttggggaaacttagttgctttcttaaaaaaat---tgatgctgagttcttcaagagcctgcaatgcatagatcctcacacatgc 16579845  T
Q  201 gagtatattgagaggctccaggatgagccaatgtttggagatttcaaaggttctttaaaggttgccttgatgagggttgaact---------caaacctc 291  Q
    || |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||         ||||||||    
T  16579846 gaatatattgagaggctccaggatgagccaatgtttggagattttgaaggttctttaaaggttgccttgatgagggttgaactcatttactacaaacctc 16579945  T
Q  292 aagaggtttatgatgcattgagaacattggttgagccggag 332  Q
    ||||||||||||||||| ||| |||||||||||||||||||    
T  16579946 aagaggtttatgatgcaatgacaacattggttgagccggag 16579986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 16615731 - 16615394
Alignment:
Q  1 atgttggtcattctcgatattcttgtgcaatatccaaacataaatgttgatgattcagaggagccagatgagaatgaaactaagaaaggggacgaaaata 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||  |||    
T  16615731 atgttggtcattctcgatattcttgtgcagtatccaaacataaatgttgatgattcagaggagccatatgagagtgaaactaagaaaggggccgactata 16615632  T
Q  101 atggatcgattcgtgtttggggaaacttagttgctttcttnnnnnnnnnnntgaggctgagtttttcaagagcctgcaatgcatagatcctcagacacgc 200  Q
    | | || |||||||||||||||||||||||||||||||||           ||| |||||||| ||||||||||||||||||||||||||||| ||| ||    
T  16615631 acgtattgattcgtgtttggggaaacttagttgctttcttaaaaaaat---tgatgctgagttcttcaagagcctgcaatgcatagatcctcacacatgc 16615535  T
Q  201 gagtatattgagaggctccaggatgagccaatgtttggagatttcaaaggttctttaaaggttgccttgatgagggttgaact---------caaacctc 291  Q
    || |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||         ||||||||    
T  16615534 gaatatattgagaggctccaggatgagccaatgtttggagattttgaaggttctttaaaggttgccttgatgagggttgaactcatttactacaaacctc 16615435  T
Q  292 aagaggtttatgatgcattgagaacattggttgagccggag 332  Q
    ||||||||||||||||| ||| |||||||||||||||||||    
T  16615434 aagaggtttatgatgcaatgacaacattggttgagccggag 16615394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 140
Target Start/End: Original strand, 16571075 - 16571212
Alignment:
Q  4 ttggtcattctcgatattcttgtgcaatatccaaacataaatgttgatgattcagaggagccagatgagaatgaaactaag-aaaggggacgaaaataat 102  Q
    |||||||||||||||||||| | |||  | ||||||||||| | |||||||||||  ||||||||||||||| ||||||||  |||||  |||  ||||     
T  16571075 ttggtcattctcgatattctagcgcagcaaccaaacataaaggctgatgattcagttgagccagatgagaattaaactaagttaagggtccgactataac 16571174  T
Q  103 ggatcgattcgtgtttggggaaacttagttgctttctt 140  Q
    ||| | |||||||||||| ||| |||||||| ||||||    
T  16571175 ggaccaattcgtgtttggcgaagcttagttgatttctt 16571212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 16571367 - 16571426
Alignment:
Q  284 caaacctcaagaggtttatgatgcattgagaacattggttgagccggagaacagcaggacc 344  Q
    |||||||||||||||||| |  ||| |||||||||||| ||| |||||||| |||||||||    
T  16571367 caaacctcaagaggtttaagtggcaatgagaacattggctgacccggagaa-agcaggacc 16571426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 351
Target Start/End: Complemental strand, 17006969 - 17006902
Alignment:
Q  284 caaacctcaagaggttt-atgatgcattgagaacattggttgagccggagaacagcaggaccttaatgg 351  Q
    |||||| |||||||||| | || ||| ||||||||| || |||||||||||||||||||||| ||||||    
T  17006969 caaaccccaagaggttttacgacgcaatgagaacat-ggctgagccggagaacagcaggaccgtaatgg 17006902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 235 - 359
Target Start/End: Original strand, 21627543 - 21627676
Alignment:
Q  235 ttggagatttcaaaggttctttaaaggttgccttgatgagggttgaactca---------aacctcaagaggtttatgatgcattgagaacattggttga 325  Q
    |||||||||||||||||||||  |||||||||||||| |||||||||||||         |||||||||||||||| |||||| |||||||||||| |||    
T  21627543 ttggagatttcaaaggttcttctaaggttgccttgattagggttgaactcatttactacaaacctcaagaggtttacgatgcaatgagaacattggctga 21627642  T
Q  326 gccggagaacagcaggaccttaatggatggatta 359  Q
    |||||||||||| |||||||||||||||||||||    
T  21627643 gccggagaacagtaggaccttaatggatggatta 21627676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 32791118 - 32791341
Alignment:
Q  1 atgttggtcattctcgatattcttgtgcaatatccaaacataaatgttgatgattcagaggagccagatgagaatgaaactaagaaaggggacgaaaata 100  Q
    |||||||||||||| |||||||| |||||  | ||||||||||| |||||||||||||  |||| ||| |||||||||| ||||||||||| | |  |||    
T  32791118 atgttggtcattcttgatattctggtgcagcacccaaacataaaggttgatgattcagttgagcaagaagagaatgaaattaagaaaggggccaactata 32791217  T
Q  101 atggatcgattcgtgtttggggaaacttagttgctttcttnnnnnnnnnnntgaggctgagtttttcaagagcctgcaatgcatagatcctcagacacgc 200  Q
    | ||| |||||||||||| ||||||||||||||||||| |             | |||||||||||||||||| ||||||| ||||||||||| ||| |     
T  32791218 acggaccgattcgtgtttcgggaaacttagttgctttcatagaaaaaatat--atgctgagtttttcaagagcatgcaatgaatagatcctcacacatgt 32791315  T
Q  201 gagtatattgagaggctccaggatga 226  Q
    || ||| |||||||||||||||||||    
T  32791316 gaatatgttgagaggctccaggatga 32791341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 235 - 359
Target Start/End: Original strand, 32791392 - 32791525
Alignment:
Q  235 ttggagatttcaaaggttctttaaaggttgccttgatgagggttgaactca---------aacctcaagaggtttatgatgcattgagaacattggttga 325  Q
    ||||||||||||||| |||||  ||||||||||||||||||||||||||||         ||| |||||||||||| ||| || |||||||||| | |||    
T  32791392 ttggagatttcaaagtttcttctaaggttgccttgatgagggttgaactcatttcctacaaacttcaagaggtttacgatacaatgagaacattagctga 32791491  T
Q  326 gccggagaacagcaggaccttaatggatggatta 359  Q
    || |||||||||||||| ||||||||||||||||    
T  32791492 gctggagaacagcaggaacttaatggatggatta 32791525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 236514 - 236379
Alignment:
Q  5 tggtcattctcgatattcttgtgcaatatccaaacataaatgttgatgattcagaggagccagatgagaatgaaactaagaaaggggacgaaaataatgg 104  Q
    ||||||| ||||| ||||| |||||  | ||||||||||| ||||||||||| | ||||| ||| ||||||||||||||||||||||| ||  || | ||    
T  236514 tggtcatcctcgacattctcgtgcagcacccaaacataaaggttgatgattctgtggagctagacgagaatgaaactaagaaaggggatgactatgacgg 236415  T
Q  105 atcgattcgtgtttggggaaacttagttgctttctt 140  Q
    | | |||| ||| ||||| |||||||||||||||||    
T  236414 acccattcatgtctggggtaacttagttgctttctt 236379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 236244 - 236194
Alignment:
Q  235 ttggagatttcaaaggttctttaaaggttgccttgatgagggttgaactca 285  Q
    ||||||||||||||| |||||  ||||| ||||||| ||||||||||||||    
T  236244 ttggagatttcaaagcttcttctaaggtggccttgaagagggttgaactca 236194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 7389291 - 7389426
Alignment:
Q  5 tggtcattctcgatattcttgtgcaatatccaaacataaatgttgatgattcagaggagccagatgagaatgaaactaagaaaggggacgaaaataatgg 104  Q
    ||||||||||||| ||||| |||||  | ||||||||||| ||||||||||| | ||||| ||| ||||||||||||||||||||||| ||  |||| ||    
T  7389291 tggtcattctcgacattctcgtgcagcacccaaacataaaggttgatgattctgtggagctagacgagaatgaaactaagaaaggggatgactataacgg 7389390  T
Q  105 atcgattcgtgtttggggaaacttagttgctttctt 140  Q
    | | |||  ||| ||||| |||||||||||||||||    
T  7389391 acccattaatgtctggggcaacttagttgctttctt 7389426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 285
Target Start/End: Original strand, 7389561 - 7389611
Alignment:
Q  235 ttggagatttcaaaggttctttaaaggttgccttgatgagggttgaactca 285  Q
    ||||||||||||||| |||||  ||||| ||||||| ||||||||||||||    
T  7389561 ttggagatttcaaagcttcttctaaggtagccttgaagagggttgaactca 7389611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 48300940 - 48300805
Alignment:
Q  5 tggtcattctcgatattcttgtgcaatatccaaacataaatgttgatgattcagaggagccagatgagaatgaaactaagaaaggggacgaaaataatgg 104  Q
    |||||||||| |||||||| |||||  | ||||||||||| ||||||||||| | ||| | ||||||||||||| ||||||||||||| ||  || | ||    
T  48300940 tggtcattcttgatattctcgtgcagcacccaaacataaaggttgatgattctgtggaactagatgagaatgaatctaagaaaggggatgactatgacgg 48300841  T
Q  105 atcgattcgtgtttggggaaacttagttgctttctt 140  Q
    | | |||| ||| ||||| |||||||||||||||||    
T  48300840 acccattcatgtctggggcaacttagttgctttctt 48300805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 285
Target Start/End: Complemental strand, 48300668 - 48300620
Alignment:
Q  237 ggagatttcaaaggttctttaaaggttgccttgatgagggttgaactca 285  Q
    ||||||||||||| |||||  ||||| ||||||| ||||||||||||||    
T  48300668 ggagatttcaaagcttcttctaaggtggccttgaagagggttgaactca 48300620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 14880 - 14803
Alignment:
Q  160 agtttttcaagagcctgcaatgcatagatcctcagacacgcgagtatattgagaggctccaggatgagccaatgtttg 237  Q
    |||||||||||||||||||| ||||||||||||| ||||| || ||| ||||||||||||| ||||| || |||||||    
T  14880 agtttttcaagagcctgcaacgcatagatcctcacacacgtgaatatgttgagaggctccaagatgaacctatgtttg 14803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 14698 - 14629
Alignment:
Q  284 caaacctcaagaggtttatgatgcattgagaacattggttgagccggagaacagcaggaccttaatggat 353  Q
    |||||||||||| ||||| || ||| | |||||||||| |||||||||||| ||||||||||||||||||    
T  14698 caaacctcaagatgtttacgaggcaattagaacattggctgagccggagaatagcaggaccttaatggat 14629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 12353 - 12293
Alignment:
Q  284 caaacctcaagaggtttatgatgcattgagaacattggttgagccggagaacagcaggacc 344  Q
    |||| ||||||||||||| || ||| |||||||||||| ||| ||||||||||||||||||    
T  12353 caaatctcaagaggtttaagaggcaatgagaacattggctgacccggagaacagcaggacc 12293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 14998 - 14937
Alignment:
Q  7 gtcattctcgatattcttgtgcaatatccaaacataaatgttgatgattcagaggagccaga 68  Q
    ||||||||| ||||||||  |||  |||||||||||| ||||||||||||| ||||||||||    
T  14998 gtcattctcaatattcttcggcagcatccaaacataactgttgatgattcacaggagccaga 14937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 12631 - 12545
Alignment:
Q  4 ttggtcattctcgatattcttgtgcaatatccaaacataaatgttgatgattcagaggagccagatgagaatgaaactaagaaaggg 90  Q
    ||||| ||||| |||||||| | |||  | ||||||||||| | | |||||||||  ||||| ||||||||| ||||||||||||||    
T  12631 ttggtaattctagatattctagcgcagcaaccaaacataaaggcttatgattcagttgagcctgatgagaattaaactaagaaaggg 12545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 140
Target Start/End: Complemental strand, 14931 - 14898
Alignment:
Q  107 cgattcgtgtttggggaaacttagttgctttctt 140  Q
    ||||| ||||||||||||||||||||||||||||    
T  14931 cgatttgtgtttggggaaacttagttgctttctt 14898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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