View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19503_high_4 (Length: 461)
Name: NF19503_high_4
Description: NF19503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19503_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 4 - 304
Target Start/End: Original strand, 1830607 - 1830903
Alignment:
| Q |
4 |
cttcaaatctcttcttctcaatctctacgatcaaaaccaaactcaccgatttgagcaattgcaccggaaacctgtccccgaatgagtaatccaatggttg |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1830607 |
cttcaaatctcttcttctcaatctctacgatcaaaaccaaactcaccgatttgagcaattgcaccggaaacctgtccccaaatgagtaatccaatggttg |
1830706 |
T |
|
| Q |
104 |
gctgggagaccnnnnnnnttatatgaaagagcgctccaaggttctatctacggaaaaactgtcagttttcttggtctaaaaggtccatataatcaacgtg |
203 |
Q |
| |
|
||| ||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1830707 |
gctcggagaccaaaaaaattatatgaaagagcgctccagggttctatctacggaaaacctgtcagttttcttggtctaaaaggtccatataatcaacgtg |
1830806 |
T |
|
| Q |
204 |
cttgaaaaaactattccttacaacagaagtatagaacatttccatctttacctttacttaatatatcttaaataacaaacaaccaggatacatgcaagca |
303 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
1830807 |
cttgaagaaactattccttacaacagaagtatagaacatttccatctttacctttacttaatatatcttaaat----aacaactaggatacatgcaagca |
1830902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 409
Target Start/End: Original strand, 9161165 - 9161236
Alignment:
| Q |
338 |
attttgtcacatcccaatcatcttccatcatcaaaggcaatcaacacatgatctttcaagctgtcataccca |
409 |
Q |
| |
|
|||||| || ||| |||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
9161165 |
attttgacatatcacaatcatcttccatcatctaaggcaatcaatggttgatctttcaagctatcataccca |
9161236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 354
Target Start/End: Original strand, 1830993 - 1831036
Alignment:
| Q |
311 |
acttataaaataatgaaatgaaaatgcattttgtcacatcccaa |
354 |
Q |
| |
|
|||||||||||||||||||| || |||||||||| ||||||||| |
|
|
| T |
1830993 |
acttataaaataatgaaatggaagtgcattttgtaacatcccaa |
1831036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 405
Target Start/End: Original strand, 9169991 - 9170058
Alignment:
| Q |
338 |
attttgtcacatcccaatcatcttccatcatcaaaggcaatcaacacatgatctttcaagctgtcata |
405 |
Q |
| |
|
|||||| || ||| |||||||||||||||||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
9169991 |
attttgacatatcacaatcatcttccatcatccaaggcaatcaatgattgatctttcaagctatcata |
9170058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 409
Target Start/End: Original strand, 9218088 - 9218145
Alignment:
| Q |
352 |
caatcatcttccatcatcaaaggcaatcaacacatgatctttcaagctgtcataccca |
409 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |||||||||||||| ||||||||| |
|
|
| T |
9218088 |
caatcatcttccatcatccaagacaatcaatggctgatctttcaagctatcataccca |
9218145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 435
Target Start/End: Complemental strand, 1869299 - 1869199
Alignment:
| Q |
335 |
tgcattttgtcacatcccaatcatcttccatcatcaaaggcaatcaacacatgatctttcaagctgtcatacccaatattaccatgactgctgctatcac |
434 |
Q |
| |
|
||||||||||| || ||||||||| |||||||| || || |||| ||||| ||||||||||||||||| || |||| ||||| || ||||||||| |
|
|
| T |
1869299 |
tgcattttgtcttataacaatcatctgccatcatccaatgctatcagtacatggtctttcaagctgtcatatccgatatctccatgtgtgatgctatcac |
1869200 |
T |
|
| Q |
435 |
c |
435 |
Q |
| |
|
| |
|
|
| T |
1869199 |
c |
1869199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 409
Target Start/End: Original strand, 9155268 - 9155324
Alignment:
| Q |
353 |
aatcatcttccatcatcaaaggcaatcaacacatgatctttcaagctgtcataccca |
409 |
Q |
| |
|
||||||||||||||||| ||| |||||| |||||||||||||||||||||||| |
|
|
| T |
9155268 |
aatcatcttccatcatccaagataatcaatgattgatctttcaagctgtcataccca |
9155324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University