View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19503_high_7 (Length: 341)

Name: NF19503_high_7
Description: NF19503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19503_high_7
NF19503_high_7
[»] chr3 (1 HSPs)
chr3 (16-301)||(40420387-40420672)
[»] chr4 (3 HSPs)
chr4 (16-129)||(27609814-27609927)
chr4 (229-287)||(46545750-46545808)
chr4 (229-301)||(21375816-21375888)
[»] chr5 (3 HSPs)
chr5 (228-297)||(11352021-11352090)
chr5 (228-297)||(11375164-11375233)
chr5 (233-297)||(21086757-21086821)
[»] chr7 (1 HSPs)
chr7 (232-297)||(2495805-2495870)
[»] chr1 (1 HSPs)
chr1 (229-301)||(14787301-14787373)
[»] chr2 (1 HSPs)
chr2 (254-297)||(8859441-8859484)
[»] chr8 (1 HSPs)
chr8 (258-298)||(9373709-9373749)


Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 40420387 - 40420672
Alignment:
Q  16 atgtcatgaaccgaaaaggtggcaacgaaagaaccttttggaaggtaaccagcatcaaattaccttctgaatcttgttagcttgcacgaactgtcataag 115  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40420387 atgtgatgaaccgaaaaggtggcaacgaaagaaccttttggagggtaaccagcatcaaattaccttctgaatcttgttagcttgcacgaactgtcataag 40420486  T
Q  116 catttaaatgtactattcaatgtaaatatggaataagccttcatttccattcttttaagcaattctatagattcacataacaaaatcaatgcacttcagg 215  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  40420487 catttaaatgtactatttaatgtaaatatggaataagccttcatttccattcttttaagcaattctacagattcacataacaaaatcagtgcacttcagg 40420586  T
Q  216 tttgaggcttagatgagagtgtgtttctcctcaatatctcatattcgattatctctaatatcaatttagatgagttaatttagctt 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  40420587 tttgaggcttagatgagagtgtgtttctcctcaatatctcatattcgattatttctaatgtcaatttagatgagttaatttagctt 40420672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 27609814 - 27609927
Alignment:
Q  16 atgtcatgaaccgaaaaggtggcaacgaaagaaccttttggaaggtaaccagcatcaaattaccttctgaatcttgttagcttgcacgaactgtcataag 115  Q
    |||||||| || | |||||||| || |||||||||||||||| ||||||||||||| | ||||||||||| |||||  |||||||||  |||| ||||||    
T  27609814 atgtcatgcactggaaaggtggaaaagaaagaaccttttggagggtaaccagcatc-atttaccttctgagtcttgggagcttgcacacactgacataag 27609912  T
Q  116 cat-ttaaatgtact 129  Q
    ||| |||||||||||    
T  27609913 catattaaatgtact 27609927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 46545750 - 46545808
Alignment:
Q  229 tgagagtgtgtttctcctcaatatctcatattcgattatctctaatatcaatttagatg 287  Q
    |||||||||| | |||||||| |||||| |||||||| ||||| || ||||||||||||    
T  46545750 tgagagtgtgctcctcctcaagatctcagattcgattttctctgatgtcaatttagatg 46545808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 21375816 - 21375888
Alignment:
Q  229 tgagagtgtgtttctcctcaatatctcatattcgattatctctaatatcaatttagatgagttaatttagctt 301  Q
    |||||||||| | ||||||||  ||||| |||||||| | |||| | ||||||| |||| |||||||||||||    
T  21375816 tgagagtgtgctcctcctcaagctctcagattcgattctttctagtgtcaatttggatgggttaatttagctt 21375888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 297
Target Start/End: Original strand, 11352021 - 11352090
Alignment:
Q  228 atgagagtgtgtttctcctcaatatctcatattcgattatctctaatatcaatttagatgagttaattta 297  Q
    ||||||||||||||||||||||| |||||  ||||||| |||| | | ||||||| ||||||||||||||    
T  11352021 atgagagtgtgtttctcctcaatgtctcaagttcgattctctccagtgtcaatttggatgagttaattta 11352090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 297
Target Start/End: Complemental strand, 11375233 - 11375164
Alignment:
Q  228 atgagagtgtgtttctcctcaatatctcatattcgattatctctaatatcaatttagatgagttaattta 297  Q
    ||||||||||||| ||||||||| |||||  ||||||| ||||  || ||||||| ||||||||||||||    
T  11375233 atgagagtgtgttcctcctcaatgtctcaagttcgattctctccgatgtcaatttggatgagttaattta 11375164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 21086757 - 21086821
Alignment:
Q  233 agtgtgtttctcctcaatatctcatattcgattatctctaatatcaatttagatgagttaattta 297  Q
    |||||| | |||||||| |||||| ||||||||||||||  | |||||||||||||  |||||||    
T  21086757 agtgtgctcctcctcaagatctcagattcgattatctctggtgtcaatttagatgacctaattta 21086821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 297
Target Start/End: Complemental strand, 2495870 - 2495805
Alignment:
Q  232 gagtgtgtttctcctcaatatctcatattcgattatctctaatatcaatttagatgagttaattta 297  Q
    ||||||| | ||||| || ||||||  ||||||||||||||||||||||||| ||| |||||||||    
T  2495870 gagtgtgctcctccttaaaatctcaggttcgattatctctaatatcaatttaaatgggttaattta 2495805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 301
Target Start/End: Complemental strand, 14787373 - 14787301
Alignment:
Q  229 tgagagtgtgtttctcctcaatatctcatattcgattatctctaatatcaatttagatgagttaatttagctt 301  Q
    |||||||||||||||||||||  | |||  ||||||| |||||||||||||||||  || |||| ||||||||    
T  14787373 tgagagtgtgtttctcctcaaggtgtcaggttcgattctctctaatatcaatttaagtgggttagtttagctt 14787301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 297
Target Start/End: Complemental strand, 8859484 - 8859441
Alignment:
Q  254 tcatattcgattatctctaatatcaatttagatgagttaattta 297  Q
    |||||||||||||||||| |||| ||||||||| ||||||||||    
T  8859484 tcatattcgattatctctgatataaatttagatcagttaattta 8859441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 9373709 - 9373749
Alignment:
Q  258 attcgattatctctaatatcaatttagatgagttaatttag 298  Q
    |||||||| | |||||||||||||||||||| |||||||||    
T  9373709 attcgattctttctaatatcaatttagatgaattaatttag 9373749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University