View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19503_low_1 (Length: 784)
Name: NF19503_low_1
Description: NF19503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19503_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 22 - 452
Target Start/End: Original strand, 9334848 - 9335291
Alignment:
| Q |
22 |
ctagcattccaaacattgatattattagacaatagatgggctaattatgttccaaaaaatatctctctcaaatggcatcataaggtttggtaaataacag |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9334848 |
ctagcattccaaacattgatattattagacaatagatgggctaattatgttccaaaaaatatctctctcaaatggcatcataaggtttggtaaataacag |
9334947 |
T |
|
| Q |
122 |
ttttaagatactcggtagaaagattgtaatgaagaaagaatcaaagaaccatagctcttattattctttttgggtctacgaaggtttgctgcctctaaac |
221 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9334948 |
ttttaagatactcggtagaaagattgtaatgaagaaagaatcaaagaaccatagctcttattattctttttgggtctacgaaggtttgctgcctctaaac |
9335047 |
T |
|
| Q |
222 |
atctacatatataagaacctatatattaaaccccaaaaagagttattgttagacatataagtgtatccgatcaactaagtttcaaatttacagcaccata |
321 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9335048 |
atctacatatataagaacctatacattaaaccccaaaaagagttattgttagacatataagtgtatccgatcaactaagtttcaaatttacagcaccata |
9335147 |
T |
|
| Q |
322 |
attattcataatacaagtggtcaacatcaaatcaaaataacataacataacaaaccaaattcaacca-------------cttttcatatgaatatgtaa |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
9335148 |
attattcataatacaagtggtcaacatcaaatcaaaataacataacataacaaaccaaattcaaccactttttccagcatcttttcatctgaatatgtaa |
9335247 |
T |
|
| Q |
409 |
ttaagaattaggagttcattgctaaacatgttgtctggaaaagt |
452 |
Q |
| |
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||||||||||| | |||||||||||||||||||||||||||||| |
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|
| T |
9335248 |
ttaagaattagaaattcattgctaaacatgttgtctggaaaagt |
9335291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 240 - 447
Target Start/End: Original strand, 9329260 - 9329480
Alignment:
| Q |
240 |
ctatatattaaaccccaaaaagagttattgttagacatataagtgtatccgatcaactaagtttcaaatttacagcaccataattattcataatacaagt |
339 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9329260 |
ctatacattaaaccccaaaaagagttattgttagacatataagtgtatccgatcaactaagtttcaaatttacagcaccataattattcataatacaagt |
9329359 |
T |
|
| Q |
340 |
ggtcaacatcaaatcaaaataacataacataacaaaccaaattcaacca-------------cttttcatatgaatatgtaattaagaattaggagttca |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||| |
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| T |
9329360 |
ggtcaacatcaaatcaaaataacataacataacaaaccaaattcaaccacttttcccagcatcttttcatttgaatatgtaattaagaattatgagttca |
9329459 |
T |
|
| Q |
427 |
ttgctaaacatgttgtctgga |
447 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
9329460 |
atgctaaacatgttgtctgga |
9329480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 543 - 729
Target Start/End: Original strand, 9335420 - 9335606
Alignment:
| Q |
543 |
tctcaattcaaaagatagaaaggaacatttttaggtgacacttataccatttggtcagtttcttaaactaatgtgatttgctctaactgcaaaactagtt |
642 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
9335420 |
tctcaattcaaaagatagaaaggaacatttttagatgacactgataccatttggtcagtttcttaaactaaagtgatttgctctaactgcaaaacaagtt |
9335519 |
T |
|
| Q |
643 |
gaaatatgacagggaatgaattcaacgaacatgccaaataattaggagaaagactaaagatcaacttcaacacatataatgaaacaa |
729 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
9335520 |
gaaatatgacagggaatgaattcaactgacatgccaaataattaggagaaacacttaagatcaacttcaacacatataatgaaacaa |
9335606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 541 - 649
Target Start/End: Original strand, 9405755 - 9405864
Alignment:
| Q |
541 |
aatctcaattcaaaagatagaaaggaacatttttaggtgacacttataccatttggtcagtttcttaaactaatgtgatttgctctaactgca-aaacta |
639 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||||||| |||||| ||||||||||| |||||||||||| || | | |||| |||||| |||| ||||| |
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|
| T |
9405755 |
aatcacaattcaaaagatagcgaggattatttttaggagacactaataccatttggccagtttcttaaattatttttattttctctaattgcataaactt |
9405854 |
T |
|
| Q |
640 |
gttgaaatat |
649 |
Q |
| |
|
|||||||||| |
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|
| T |
9405855 |
gttgaaatat |
9405864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 546 - 649
Target Start/End: Original strand, 9424007 - 9424111
Alignment:
| Q |
546 |
caattcaaaagatagaaaggaacatttttaggtgacacttataccatttggtcagtttcttaaactaatgtgatttgctctaactgca-aaactagttga |
644 |
Q |
| |
|
||||||||||||||| |||| ||||||||| |||||| ||||||||||| |||||||||||| || | | |||| |||||| |||| ||||| ||||| |
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|
| T |
9424007 |
caattcaaaagatagcgaggattatttttaggagacactaataccatttggccagtttcttaaattatttttattttctctaattgcataaacttgttga |
9424106 |
T |
|
| Q |
645 |
aatat |
649 |
Q |
| |
|
||||| |
|
|
| T |
9424107 |
aatat |
9424111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 9339901 - 9339949
Alignment:
| Q |
329 |
ataatacaagtggtcaacatcaaatcaaaataacataacataacaaacc |
377 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||| ||||||||||| |
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|
| T |
9339901 |
ataatgcaagaggtcaacatcaaatcaaaataacatagcataacaaacc |
9339949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 586 - 680
Target Start/End: Original strand, 9394470 - 9394565
Alignment:
| Q |
586 |
ataccatttggtcagtttcttaaactaatgtgatttgctctaactgca-aaactagttgaaatatgacagggaatgaattcaacgaacatgccaaa |
680 |
Q |
| |
|
||||||||||| |||||||||||| || | |||||| |||||| |||| ||||| ||||||||||| ||||||| ||||||| | ||||||||| |
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|
| T |
9394470 |
ataccatttggccagtttcttaaattattttgatttcctctaattgcataaacttgttgaaatatgggagggaataaattcaattaccatgccaaa |
9394565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 9356695 - 9356777
Alignment:
| Q |
138 |
agaaagattgtaatgaagaaagaatcaaagaaccatagctcttattattctttttgggtctacgaaggtttgctgcctctaaa |
220 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||| |||||||| | ||||| || | ||||||||| |||||||||| |
|
|
| T |
9356695 |
agaaagattgtaatggagaaagaatcaaagaagcataactcttattttacttttcaagttttagaaggtttgttgcctctaaa |
9356777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 8060940 - 8060980
Alignment:
| Q |
328 |
cataatacaagtggtcaacatcaaatcaaaataacataaca |
368 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||| |
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|
| T |
8060940 |
cataatacaagtagtcaacatcaaatcaaaataacagaaca |
8060980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 601 - 649
Target Start/End: Complemental strand, 9697026 - 9696977
Alignment:
| Q |
601 |
tttcttaaactaatgtgatttgctctaactgca-aaactagttgaaatat |
649 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| || ||||||||||||| |
|
|
| T |
9697026 |
tttcttaaactattttgatttgctctaactgcataagctagttgaaatat |
9696977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 553 - 630
Target Start/End: Original strand, 4426670 - 4426746
Alignment:
| Q |
553 |
aaagatagaaaggaacatttttaggtgacacttataccatttggtcagtttcttaaactaatgtgatttgctctaact |
630 |
Q |
| |
|
|||||||| |||| ||||||||| | |||||| ||||||||||| ||||||| ||||||| | ||||||||| ||||| |
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|
| T |
4426670 |
aaagatagcaagggacatttttaagggacactgataccatttggccagtttc-taaactattttgatttgctttaact |
4426746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 329 - 368
Target Start/End: Original strand, 230969 - 231008
Alignment:
| Q |
329 |
ataatacaagtggtcaacatcaaatcaaaataacataaca |
368 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
230969 |
ataatgcaagtagtcaacatcaaatcaaaataacataaca |
231008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 213842 - 213802
Alignment:
| Q |
337 |
agtggtcaacatcaaatcaaaataacataacataacaaacc |
377 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
213842 |
agtggtcaacatcgaatcaaaataacataacataaaaaacc |
213802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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