View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19503_low_2 (Length: 716)
Name: NF19503_low_2
Description: NF19503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19503_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 13 - 441
Target Start/End: Complemental strand, 48144191 - 48143764
Alignment:
| Q |
13 |
attatactgatgcatgcagtgtcctacttcagttggtcggtgctgatttcattgaggccattatggattaaaatattgttgttcctgttgtggatttctt |
112 |
Q |
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| T |
48144191 |
attatacatatgcatgcagtgtcctacttcagttggtcggtgctgatttcattgaggccattatggattaaaatattgttgttccagttgtggatttctt |
48144092 |
T |
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| Q |
113 |
gttacgaggtttatgttctctatcacaagtttggtgtactctgttagcctttttgtgcttcttttgctttattagtgagttactatttatcctcagtaac |
212 |
Q |
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| T |
48144091 |
gttacgaggtttatgttctctatcacaagtttggtgtactatgttagcctttttgtgcttcttttgctttattagtgagttactatttatcctcagtaac |
48143992 |
T |
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| Q |
213 |
tagcatgtaataagtgtaaacattggtttttataattttttaaaacgaagggaaacaatgtgaaagaaaaacgatatgatgnnnnnnnnggacaatgaat |
312 |
Q |
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| T |
48143991 |
-agcatgtaataagtgtaaacattggtttttataattttttaaaacgaagggaaacaatgtgaaagaaaaacgatatgatgttttttttagacaatgaat |
48143893 |
T |
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| Q |
313 |
tggggatgtggggagggcactaattaaaatgcattttgggtataacgatgtaataagcacaatactatatgaaccttcaccgaataatgtttagttggaa |
412 |
Q |
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| T |
48143892 |
tggggatatggggagggcactaattaaaatgcattttgggtataacgatgtaataagcacaatactatatgaaccttcaacgaataatgtttagttggaa |
48143793 |
T |
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| Q |
413 |
aatgttactaacacactttcttacacaca |
441 |
Q |
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| T |
48143792 |
aatgttaccaacacactttcttacacaca |
48143764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 470 - 697
Target Start/End: Complemental strand, 48143742 - 48143514
Alignment:
| Q |
470 |
cattgtgttgagaattgtctcaaaattgatgaatgaaggttgggcaaaa-ttctcgtacgttttggagtcacgggggcacgattttgagtcagttttggg |
568 |
Q |
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| T |
48143742 |
cattgtgttgagaattgtctcaaaattgatgaatgaaggttgggcaaaaattctggtacgatttggagtcacgggggcacgattttgggtcagttttgga |
48143643 |
T |
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| Q |
569 |
agttttagtccatcaaaaatcgcgacaccatttggcgaaattagggcccgactttgacagataagttttgaatagtatagtctacgagttgaaatcgggg |
668 |
Q |
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| T |
48143642 |
aattttagtccatcaaaaatcgcgacacaatttggcgaaattagggtccgactttgacagataaggttcgaatagtatagtgtacgagttgaaattgggg |
48143543 |
T |
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| Q |
669 |
cacgatttctcgggatatgaactttgtaa |
697 |
Q |
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| T |
48143542 |
cacgatttctcgggatatgaactctgtaa |
48143514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 479 - 518
Target Start/End: Original strand, 27391557 - 27391596
Alignment:
| Q |
479 |
gagaattgtctcaaaattgatgaatgaaggttgggcaaaa |
518 |
Q |
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| T |
27391557 |
gagaattgtctcaaaattgatgtatgaaggttgggcaaaa |
27391596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 584 - 678
Target Start/End: Original strand, 13121460 - 13121553
Alignment:
| Q |
584 |
aaaatcgcgacaccatttggcgaaattagggcccgactttgacagataagttttgaatagtatagtctacgagttgaaatcggggcacgatttct |
678 |
Q |
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| T |
13121460 |
aaaatcgagacacgatttggcaaaatcggagcccga-tttgacatataaggtttgaatagtacagtgtacgagttgaaatcggggaaagatttct |
13121553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 475 - 518
Target Start/End: Complemental strand, 9049785 - 9049742
Alignment:
| Q |
475 |
tgttgagaattgtctcaaaattgatgaatgaaggttgggcaaaa |
518 |
Q |
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| T |
9049785 |
tgttgagaattgtctcaaaacttatgaatgaaggttggacaaaa |
9049742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 518
Target Start/End: Complemental strand, 29796853 - 29796812
Alignment:
| Q |
477 |
ttgagaattgtctcaaaattgatgaatgaaggttgggcaaaa |
518 |
Q |
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| T |
29796853 |
ttgagaattgtctcaaaattgatgattgaagattcggcaaaa |
29796812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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