View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19503_low_3 (Length: 534)
Name: NF19503_low_3
Description: NF19503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19503_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 115 - 519
Target Start/End: Original strand, 23472869 - 23473272
Alignment:
| Q |
115 |
aattttcttgattcttgtccaccccttgattcatctnnnnnnnngatgccggtatctaatcaaacttcaaaatacttgtacttcagattatatcgaattt |
214 |
Q |
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| T |
23472869 |
aattttcttgattcttgtccaccccttggttcatctaaaaaaaagattctggtatctaattaaacttcaaaatacttgtacttaagattatatcgaattt |
23472968 |
T |
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| Q |
215 |
aaactcactttatgttatgctaatgctatttatagagaacgagagcactctcaagtgtcaacatcatgatttatgaatgtggaccaatgttcagtgattg |
314 |
Q |
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| T |
23472969 |
aaactcactttatgttatgctaatgctatt-atagagaacgagaacactctcaagtgtcaacatcttgatttatgaatgtggaccaatgttcagtgattg |
23473067 |
T |
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| Q |
315 |
aagtaaatgaagggaacattattcatgtgaacgtcgttaacatacaactaccaaattcagatgctgttttgtactacttttaatgtcaaactcaaacaat |
414 |
Q |
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| T |
23473068 |
aagtaaatgaagggaacattattcatgtgaacgtcgttaacatacaactaccaaattcagatgctgttttgtactacttttaatgtcaaactcaaacaat |
23473167 |
T |
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| Q |
415 |
gtacaaatgtgaaatgaatatcaaactctctgtgtctcttcctctccctcatatgattattgtctgtcagcaatagcgacaagttaatgaaagctacaac |
514 |
Q |
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| T |
23473168 |
gtacaaatgtgaaatgaatatcaaactctctgtgtctcttcctctccctcatatgattattgtctgtcagcaatagtgacaagttaatgaaagctactac |
23473267 |
T |
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| Q |
515 |
tttct |
519 |
Q |
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| T |
23473268 |
tttct |
23473272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 23472714 - 23472847
Alignment:
| Q |
18 |
tgtacatatttattctattttttaattatatttcttatgga-tcggcggcataggctaggaggctctcaggaggactaacctagttaggatgtctgcgaa |
116 |
Q |
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| T |
23472714 |
tgtacatatttattctattttttaattatatttcttatggggtcggtggcataggataagaggctctcagggggactaacctagttaggatgtctgcgaa |
23472813 |
T |
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| Q |
117 |
ttttcttgattcttgtccaccccttgattcatct |
150 |
Q |
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| T |
23472814 |
ttttcttgattcttgtccaccccttggttcatct |
23472847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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