View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19503_low_9 (Length: 340)
Name: NF19503_low_9
Description: NF19503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19503_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 14 - 333
Target Start/End: Original strand, 2254257 - 2254576
Alignment:
| Q |
14 |
agggaagacaaatatgcacgagtttggcatgggtacaacaggaaataattctaattacgggtaagctaatctatatgttatttattgatgccattataaa |
113 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2254257 |
agggaagacaaatatgcatgagtttggcatgggtacaacaggaaataattctaattacgggtaagctaatctatatgttatttattgatgccattataaa |
2254356 |
T |
|
| Q |
114 |
cataagaggcttttggcttgtcagaagggcgatatctgcatactttacctgatacatatttaggacttcattgcttcccacttttccttctttcaaatta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2254357 |
cataagaggcttttggcttgtcagaagggcgatatctgcatactttacctgatacatatttaggacttcactgcttcccacttttccttctttcaaatta |
2254456 |
T |
|
| Q |
214 |
ggggacacaagtagtcaagtaaagatgttaacaagtgtgttcttattttcattccttatgtgttcatttcacatggcttccatcacaagcttaagaaccg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2254457 |
ggggacacaagtagtcaagtaaagatgttaacaagtgtgttcttattttcattccttatgtgttcatttcacatggcttccatcacaagcttaagaaccg |
2254556 |
T |
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| Q |
314 |
ttatagaaagataaaaaatg |
333 |
Q |
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|||||||||||||||||||| |
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| T |
2254557 |
ttatagaaagataaaaaatg |
2254576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 7577321 - 7577517
Alignment:
| Q |
14 |
agggaagacaaatatgcacgagtttggcatgggtacaacaggaaataattctaattacgggtaagctaatctatatgttatttattgatgccattataaa |
113 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7577321 |
agggaagacaaatatgcacgaatttggcatgggtacaacaggaaataattctaattacgagtaagctaatctatatgttatttattgatgccattataaa |
7577420 |
T |
|
| Q |
114 |
cataagaggcttttggcttgtcagaagggcgatatctgcatactttacctgatacatatttaggacttcattgcttcccacttttccttctttcaaa |
210 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7577421 |
cataagaggcttttggcttgtcacaagggagatatctgcatactttacctgatatatatttaggacttcattgcttcccacttttccttcttccaaa |
7577517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 27704263 - 27704459
Alignment:
| Q |
14 |
agggaagacaaatatgcacgagtttggcatgggtacaacaggaaataattctaattacgggtaagctaatctatatgttatttattgatgccattataaa |
113 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27704263 |
agggaagacaaatatgcacgaatttggcatgggtacaacaggaaataattctaattacgggtaagctaatctatatgttatttattgatgccattataaa |
27704362 |
T |
|
| Q |
114 |
cataagaggcttttggcttgtcagaagggcgatatctgcatactttacctgatacatatttaggacttcattgcttcccacttttccttctttcaaa |
210 |
Q |
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||||||||||||||||||||||| || || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27704363 |
cataagaggcttttggcttgtcacaaaggagatatctgcatactttacctgatatatatttaggacttcattgcttcccacttttccttcttccaaa |
27704459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 11687763 - 11687567
Alignment:
| Q |
14 |
agggaagacaaatatgcacgagtttggcatgggtacaacaggaaataattctaattacgggtaagctaatctatatgttatttattgatgccattataaa |
113 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11687763 |
agggaagacaaatatgcacgaatttggcatgagtacaacaggaaataattctaattacgggtaagctaatctatatgttatttattgatgccattataaa |
11687664 |
T |
|
| Q |
114 |
cataagaggcttttggcttgtcagaagggcgatatctgcatactttacctgatacatatttaggacttcattgcttcccacttttccttctttcaaa |
210 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11687663 |
cataagaggcttttggcttgtcacaagggagatatctgcatactttacctgatatatatttaggacttcattgcttcccacttttccttcttccaaa |
11687567 |
T |
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