View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19504_low_1 (Length: 450)

Name: NF19504_low_1
Description: NF19504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19504_low_1
NF19504_low_1
[»] chr1 (23 HSPs)
chr1 (110-433)||(2432867-2433190)
chr1 (128-334)||(2353351-2353553)
chr1 (335-396)||(2353227-2353288)
chr1 (13-70)||(2432770-2432827)
chr1 (13-70)||(2353600-2353657)
chr1 (393-428)||(4052579-4052614)
chr1 (279-333)||(52306834-52306888)
chr1 (116-152)||(2354198-2354235)
chr1 (177-218)||(2432521-2432562)
chr1 (277-334)||(44405784-44405840)
chr1 (396-428)||(2978311-2978343)
chr1 (396-428)||(13312625-13312657)
chr1 (396-428)||(25815510-25815542)
chr1 (277-333)||(27793209-27793265)
chr1 (396-428)||(28220860-28220892)
chr1 (277-333)||(31617343-31617398)
chr1 (396-428)||(32133391-32133423)
chr1 (396-428)||(35978692-35978724)
chr1 (277-333)||(38847696-38847752)
chr1 (277-333)||(44405110-44405166)
chr1 (277-333)||(48338113-48338168)
chr1 (396-428)||(48662550-48662582)
chr1 (396-428)||(48964557-48964589)
[»] chr3 (15 HSPs)
chr3 (277-333)||(8394845-8394901)
chr3 (277-333)||(36171354-36171410)
chr3 (395-428)||(5908118-5908151)
chr3 (277-333)||(914885-914941)
chr3 (396-428)||(24987594-24987626)
chr3 (396-428)||(25467374-25467406)
chr3 (277-333)||(33872951-33873007)
chr3 (277-333)||(35434313-35434369)
chr3 (396-428)||(35688190-35688222)
chr3 (277-329)||(37411604-37411656)
chr3 (277-333)||(44076817-44076873)
chr3 (396-428)||(44792830-44792862)
chr3 (396-428)||(48079962-48079994)
chr3 (396-428)||(49359850-49359882)
chr3 (396-428)||(50481251-50481283)
[»] scaffold0032 (1 HSPs)
scaffold0032 (277-333)||(31130-31186)
[»] chr8 (4 HSPs)
chr8 (277-333)||(44388271-44388327)
chr8 (277-333)||(20667007-20667063)
chr8 (277-333)||(29430185-29430241)
chr8 (277-333)||(41153331-41153387)
[»] chr7 (18 HSPs)
chr7 (277-333)||(689344-689400)
chr7 (277-333)||(9228762-9228818)
chr7 (277-333)||(34286152-34286208)
chr7 (277-333)||(38437282-38437338)
chr7 (396-428)||(48645994-48646026)
chr7 (393-428)||(40342499-40342534)
chr7 (278-333)||(42913176-42913231)
chr7 (277-315)||(19517045-19517083)
chr7 (394-428)||(19804935-19804969)
chr7 (279-329)||(27836716-27836766)
chr7 (396-428)||(5023373-5023405)
chr7 (277-333)||(8928351-8928407)
chr7 (396-428)||(16567466-16567498)
chr7 (396-428)||(16598164-16598196)
chr7 (277-333)||(29487063-29487119)
chr7 (277-333)||(33234055-33234111)
chr7 (396-428)||(43224223-43224255)
chr7 (396-428)||(46181112-46181144)
[»] chr2 (10 HSPs)
chr2 (392-428)||(23231622-23231658)
chr2 (277-333)||(24521563-24521619)
chr2 (393-428)||(668154-668189)
chr2 (392-433)||(11788509-11788550)
chr2 (395-428)||(25424642-25424675)
chr2 (277-333)||(3707040-3707096)
chr2 (277-333)||(11870306-11870362)
chr2 (277-333)||(21095371-21095426)
chr2 (396-428)||(33867729-33867761)
chr2 (277-333)||(35361699-35361755)
[»] chr4 (14 HSPs)
chr4 (277-315)||(5753723-5753761)
chr4 (396-428)||(3387392-3387424)
chr4 (277-333)||(10263413-10263469)
chr4 (396-428)||(14576694-14576726)
chr4 (277-333)||(21560986-21561042)
chr4 (277-333)||(22117791-22117847)
chr4 (396-428)||(22829652-22829684)
chr4 (396-428)||(32655698-32655730)
chr4 (277-333)||(36517944-36518000)
chr4 (396-428)||(42053444-42053476)
chr4 (396-428)||(42755243-42755275)
chr4 (277-333)||(43328493-43328549)
chr4 (277-333)||(51448570-51448626)
chr4 (396-428)||(52180954-52180986)
[»] chr5 (8 HSPs)
chr5 (395-428)||(14645208-14645241)
chr5 (277-333)||(287882-287938)
chr5 (277-333)||(7282558-7282614)
chr5 (277-333)||(9698579-9698635)
chr5 (396-428)||(15719364-15719396)
chr5 (277-333)||(26909277-26909332)
chr5 (277-333)||(33613666-33613722)
chr5 (277-333)||(37460496-37460552)
[»] scaffold0045 (1 HSPs)
scaffold0045 (277-333)||(18165-18221)
[»] scaffold0010 (1 HSPs)
scaffold0010 (277-333)||(36854-36910)
[»] scaffold0005 (1 HSPs)
scaffold0005 (396-428)||(240649-240681)
[»] chr6 (6 HSPs)
chr6 (277-333)||(246020-246076)
chr6 (396-428)||(6337133-6337165)
chr6 (277-333)||(11954805-11954860)
chr6 (396-428)||(13534371-13534403)
chr6 (277-333)||(18310487-18310543)
chr6 (277-333)||(34317703-34317759)


Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 110 - 433
Target Start/End: Original strand, 2432867 - 2433190
Alignment:
Q  110 ttgtagagcatgtgctgccaaagtctaataatagttcaaaagtccaatataatttcaagtcaagtatagtataataatttctacttaattttatgtgact 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2432867 ttgtagagcatgtgctgccaaagtctaataatagttcaaaagtccaatataatttcaagtcaagtatagtataataatttctacttaattttatgtgact 2432966  T
Q  210 taccatgacgaattaaaatataggagtaccgggtcattgcaaattataatttcataaaagaaaataccgtttagagtaatattttatgtccatctatttg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2432967 taccatgacgaattaaaatataggagtaccgggtcattgcaaattataatttcataaaagaaaataccgtttagagtaatattttatgtccatctatttg 2433066  T
Q  310 ttttttaattacactaatgcatattctcaacttttgtactatataataaataaaaaataatcattattaactagtaagagaccaactagggatggcaatg 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2433067 ttttttaattacactaatgcatattctcaacttttgtactatataataaataaaaaataatcattattaactagtaagagaccaactagggatggcaatg 2433166  T
Q  410 agtacccaatgggtagggttttat 433  Q
    ||||||||||||||||||||||||    
T  2433167 agtacccaatgggtagggttttat 2433190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 128 - 334
Target Start/End: Complemental strand, 2353553 - 2353351
Alignment:
Q  128 caaagtctaataatagttcaaaagtccaatataatttcaagtcaagtatagtataataatttctacttaattttatgtgacttaccatgacgaattaaaa 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2353553 caaagtctaataatagttcaaaagtccaatataatttcaagtcaagtatagtataataatttctacttaattttatgtgacttaccatgacgaattaaaa 2353454  T
Q  228 tataggagtaccgggtcattgcaaattataatttc-ataaaagaaaataccgtttagagtaatattttatgtccatctatttgttttttaattacactaa 326  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||  |     |||||||||||| ||  ||| ||||||||||| |||| ||||    
T  2353453 tataggagtaccgggtcattgcaaattataatttcaataaaaaaaaatactat-----gtaatattttatatctgtctgtttgttttttagttacgctaa 2353359  T
Q  327 tgcatatt 334  Q
    || |||||    
T  2353358 tggatatt 2353351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 335 - 396
Target Start/End: Complemental strand, 2353288 - 2353227
Alignment:
Q  335 ctcaacttttgtactatataataaataaaaaataatcattattaactagtaagagaccaact 396  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2353288 ctcaacttttgtattatataataaataaaaaataatcattattaactagtaagagaccaact 2353227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 2432770 - 2432827
Alignment:
Q  13 aatatctctgtgctttgttctgacgggatctagttggaaaggaacacacaagtttaat 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2432770 aatatctctgtgctttgttctgacgggatctagttggaaaggaacacacaagtttaat 2432827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 2353657 - 2353600
Alignment:
Q  13 aatatctctgtgctttgttctgacgggatctagttggaaaggaacacacaagtttaat 70  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2353657 aatatctttgtgctttgttctgacggaatctagttggaaaggaacacacaagtttaat 2353600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 428
Target Start/End: Complemental strand, 4052614 - 4052579
Alignment:
Q  393 aactagggatggcaatgagtacccaatgggtagggt 428  Q
    ||||||||||||||||| ||||||||||||||||||    
T  4052614 aactagggatggcaatgggtacccaatgggtagggt 4052579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 52306834 - 52306888
Alignment:
Q  279 tttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||| ||||| ||||||||  |||| || ||||||||    
T  52306834 tttagagtaatattttatgtccgtctatctgtttttttgttacgctgatgcatat 52306888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 2354235 - 2354198
Alignment:
Q  116 agcatgtgctgccaaa-gtctaataatagttcaaaagt 152  Q
    |||||||||||||||| |||||||||||||||||||||    
T  2354235 agcatgtgctgccaaaagtctaataatagttcaaaagt 2354198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 2432521 - 2432562
Alignment:
Q  177 agtataataatttctacttaattttatgtgacttaccatgac 218  Q
    ||||| |||||||||||||||||||||| |||||||| ||||    
T  2432521 agtatgataatttctacttaattttatgagacttaccgtgac 2432562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 334
Target Start/End: Original strand, 44405784 - 44405840
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatatt 334  Q
    |||||| ||||||||||||||||| ||| | ||||||||  |||||||||||||||||    
T  44405784 cgtttaaagtaatattttatgtccgtctgtctgtttttt-gttacactaatgcatatt 44405840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 2978311 - 2978343
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  2978311 tagggatggcaatgggtacccaatgggtagggt 2978343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 13312625 - 13312657
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  13312625 tagggatggcaatgggtacccaatgggtagggt 13312657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 25815542 - 25815510
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  25815542 tagggatggcaatgggtacccaatgggtagggt 25815510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 27793209 - 27793265
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||| ||| ||||| ||||  |||| || ||||||||    
T  27793209 cgtttagagtaatattttatgtccgtctgtttgtgtttttgttacgctgatgcatat 27793265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 28220860 - 28220892
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  28220860 tagggatggcaatgggtacccaatgggtagggt 28220892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 31617343 - 31617398
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||| ||||||||||||||||||||| | ||||||||  |||| |||||||||||    
T  31617343 cgtttaaagtaatattttatgtccatctgtctgtttttt-gttacgctaatgcatat 31617398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 32133391 - 32133423
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  32133391 tagggatggcaatgggtacccaatgggtagggt 32133423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 35978724 - 35978692
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  35978724 tagggatggcaatgggtacccaatgggtagggt 35978692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 38847752 - 38847696
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||||| | | ||| ||||  |||| |||||||||||    
T  38847752 cgtttagagtaatattttatgtccatttgtctgtgtttttgttacgctaatgcatat 38847696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 44405110 - 44405166
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||| ||| ||||| ||||  |||| || ||||||||    
T  44405110 cgtttagagtaatattttatgtccgtctgtttgtgtttttgttacgctgatgcatat 44405166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 48338113 - 48338168
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||| ||| | ||||||||  |||| |||||||||||    
T  48338113 cgtttagagtaatattttatgtccgtctgtctgtttttt-gttacgctaatgcatat 48338168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 48662550 - 48662582
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  48662550 tagggatggcaatgggtacccaatgggtagggt 48662582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 48964589 - 48964557
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  48964589 tagggatggcaatgggtacccaatgggtagggt 48964557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 8394845 - 8394901
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||||||| ||||||||||  ||||  ||||||||||    
T  8394845 cgtttagagtaatattttatgtccatctgtttgtttttttgttacgttaatgcatat 8394901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 36171410 - 36171354
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||||| | | ||||||||  ||||||||||||||||    
T  36171410 cgtttagagtaatattttatgtccatttgtctgtttttttgttacactaatgcatat 36171354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 428
Target Start/End: Original strand, 5908118 - 5908151
Alignment:
Q  395 ctagggatggcaatgagtacccaatgggtagggt 428  Q
    ||||||||||||||| ||||||||||||||||||    
T  5908118 ctagggatggcaatgggtacccaatgggtagggt 5908151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 914885 - 914941
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||| ||| | ||||||||  |||| || ||||||||    
T  914885 cgtttagagtaatattttatgtccgtctgtctgtttttttgttacgctgatgcatat 914941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 24987626 - 24987594
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  24987626 tagggatggcaatgggtacccaatgggtagggt 24987594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 25467374 - 25467406
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  25467374 tagggatggcaatgggtacccaatgggtagggt 25467406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 33872951 - 33873007
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||| | ||| | ||||||||  |||| |||||||||||    
T  33872951 cgtttagagtaatattttatgttcgtctgtctgtttttttgttacgctaatgcatat 33873007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 35434313 - 35434369
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    ||||||||||||||||| |||||||| | | ||||||||  |||| |||||||||||    
T  35434313 cgtttagagtaatatttaatgtccatttgtctgtttttttgttacgctaatgcatat 35434369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 35688190 - 35688222
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||||||| ||||||||||||||    
T  35688190 tagggatggcaatgagtatccaatgggtagggt 35688222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 329
Target Start/End: Original strand, 37411604 - 37411656
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgc 329  Q
    |||||||||||||||||||||||| | | ||||||||||  ||||| ||||||    
T  37411604 cgtttagagtaatattttatgtccgtatgtttgtttttttgttacaataatgc 37411656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 44076873 - 44076817
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||| ||| | ||||||||  |||| || ||||||||    
T  44076873 cgtttagagtaatattttatgtccgtctgtctgtttttttgttacgctgatgcatat 44076817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 44792862 - 44792830
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  44792862 tagggatggcaatgggtacccaatgggtagggt 44792830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 48079962 - 48079994
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  48079962 tagggatggcaatgggtacccaatgggtagggt 48079994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 49359850 - 49359882
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  49359850 tagggatggcaatgggtacccaatgggtagggt 49359882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 50481283 - 50481251
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  50481283 tagggatggcaatgggtacccaatgggtagggt 50481251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 31186 - 31130
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||| ||| | | ||||||  ||||||||||||||||    
T  31186 cgtttagagtaatattttatgtccgtctgtctatttttttgttacactaatgcatat 31130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 44388327 - 44388271
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||| ||| | ||||||||  |||| |||||||||||    
T  44388327 cgtttagagtaatattttatgtccgtctgtctgtttttttgttacgctaatgcatat 44388271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 20667063 - 20667007
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||| ||| | ||||||||  |||| || ||||||||    
T  20667063 cgtttagagtaatattttatgtccgtctgtctgtttttttgttacgctgatgcatat 20667007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 29430185 - 29430241
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||| | ||| | | ||||||  ||||||||||||||||    
T  29430185 cgtttagagtaatattttatgttcgtctgtctctttttttgttacactaatgcatat 29430241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 41153331 - 41153387
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||| | ||| | ||||||||  |||| |||||||||||    
T  41153331 cgtttagagtaatattttatgttcgtctgtctgtttttttgttacgctaatgcatat 41153387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 689344 - 689400
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||||||| |||| |||||  ||||  ||||||||||    
T  689344 cgtttagagtaatattttatgtccatctgtttggttttttgttacgttaatgcatat 689400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 9228818 - 9228762
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||||| | | ||||||||  |||| |||||||||||    
T  9228818 cgtttagagtaatattttatgtccatttgtctgtttttttgttacgctaatgcatat 9228762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 34286208 - 34286152
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||| ||| | ||||||||  |||| |||||||||||    
T  34286208 cgtttagagtaatattttatgtccgtctgtctgtttttttgttacgctaatgcatat 34286152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 38437338 - 38437282
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||| ||||| ||||||||  |||| | |||||||||    
T  38437338 cgtttagagtaatattttatgtccgtctatctgtttttttgttacgcgaatgcatat 38437282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 48646026 - 48645994
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||||||||||||||||||||||    
T  48646026 tagggatggcaatgagtacccaatgggtagggt 48645994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 428
Target Start/End: Complemental strand, 40342534 - 40342499
Alignment:
Q  393 aactagggatggcaatgagtacccaatgggtagggt 428  Q
    ||||||||||||||||||||| ||||||||||||||    
T  40342534 aactagggatggcaatgagtatccaatgggtagggt 40342499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 333
Target Start/End: Original strand, 42913176 - 42913231
Alignment:
Q  278 gtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    ||||||||||||||||||||||| ||| | ||||||||  |||| |||||||||||    
T  42913176 gtttagagtaatattttatgtccgtctgtctgtttttttgttacgctaatgcatat 42913231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 315
Target Start/End: Original strand, 19517045 - 19517083
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgtttttt 315  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  19517045 cgtttagagtaatattttatgtccgtctatttgtgtttt 19517083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 428
Target Start/End: Original strand, 19804935 - 19804969
Alignment:
Q  394 actagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||||| ||||||||||||||||||    
T  19804935 actagggatggcaatgggtacccaatgggtagggt 19804969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 27836716 - 27836766
Alignment:
Q  279 tttagagtaatattttatgtccatctatttgttttttaattacactaatgc 329  Q
    |||||||||||||||||||||| ||| ||||||||||  |||| |||||||    
T  27836716 tttagagtaatattttatgtccgtctgtttgtttttttgttacgctaatgc 27836766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 5023405 - 5023373
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  5023405 tagggatggcaatgggtacccaatgggtagggt 5023373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 8928407 - 8928351
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||||||| | ||| ||||  |||| || ||||||||    
T  8928407 cgtttagagtaatattttatgtccatctgtctgtgtttttgttacgctgatgcatat 8928351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 16567466 - 16567498
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  16567466 tagggatggcaatgggtacccaatgggtagggt 16567498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 16598196 - 16598164
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  16598196 tagggatggcaatgggtacccaatgggtagggt 16598164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 29487063 - 29487119
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||| ||| | ||||||||  |||| || ||||||||    
T  29487063 cgtttagagtaatattttatgtccgtctgtctgtttttttgttacgctgatgcatat 29487119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 33234111 - 33234055
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||| ||| | ||||||||  |||| || ||||||||    
T  33234111 cgtttagagtaatattttatgtccgtctgtctgtttttttgttacgctgatgcatat 33234055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 43224223 - 43224255
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    ||||||||||||||||||||||||||| |||||    
T  43224223 tagggatggcaatgagtacccaatgggaagggt 43224255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 46181112 - 46181144
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  46181112 tagggatggcaatgggtacccaatgggtagggt 46181144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 428
Target Start/End: Original strand, 23231622 - 23231658
Alignment:
Q  392 caactagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||||||| ||||||||||||||||||    
T  23231622 caactagggatggcaatgggtacccaatgggtagggt 23231658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 24521563 - 24521619
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||  ||| | ||||||||  ||||||||||||||||    
T  24521563 cgtttagagtaatattttatgtctctctgtctgtttttttgttacactaatgcatat 24521619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 428
Target Start/End: Complemental strand, 668189 - 668154
Alignment:
Q  393 aactagggatggcaatgagtacccaatgggtagggt 428  Q
    ||||||||||||||||| ||||||||||||||||||    
T  668189 aactagggatggcaatgggtacccaatgggtagggt 668154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 433
Target Start/End: Original strand, 11788509 - 11788550
Alignment:
Q  392 caactagggatggcaatgagtacccaatgggtagggttttat 433  Q
    |||||||||||||||||| |||| ||||||||||||| ||||    
T  11788509 caactagggatggcaatgggtactcaatgggtagggtattat 11788550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 428
Target Start/End: Original strand, 25424642 - 25424675
Alignment:
Q  395 ctagggatggcaatgagtacccaatgggtagggt 428  Q
    ||||||||||||||| ||||||||||||||||||    
T  25424642 ctagggatggcaatgggtacccaatgggtagggt 25424675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 3707040 - 3707096
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||| ||| | ||||||||  |||| || ||||||||    
T  3707040 cgtttagagtaatattttatgtccgtctgtctgtttttttgttacgctgatgcatat 3707096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 11870362 - 11870306
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||| ||| | ||||||||  |||| || ||||||||    
T  11870362 cgtttagagtaatattttatgtccgtctgtctgtttttttgttacgctgatgcatat 11870306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 21095371 - 21095426
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||| ||||||||||||||||||||| | ||||||||  |||| |||||||||||    
T  21095371 cgtttaaagtaatattttatgtccatctgtctgtttttt-gttacgctaatgcatat 21095426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 33867761 - 33867729
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  33867761 tagggatggcaatgggtacccaatgggtagggt 33867729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 35361755 - 35361699
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||| ||| | ||||||||  |||| || ||||||||    
T  35361755 cgtttagagtaatattttatgtccgtctgtctgtttttttgttacgctgatgcatat 35361699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 315
Target Start/End: Original strand, 5753723 - 5753761
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgtttttt 315  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  5753723 cgtttagagtaatattttatgtccgtctgtttgtttttt 5753761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 3387424 - 3387392
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  3387424 tagggatggcaatgggtacccaatgggtagggt 3387392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 10263469 - 10263413
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||| ||| | ||||||||  |||| || ||||||||    
T  10263469 cgtttagagtaatattttatgtccgtctgtctgtttttttgttacgctgatgcatat 10263413  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 14576694 - 14576726
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  14576694 tagggatggcaatgggtacccaatgggtagggt 14576726  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 21560986 - 21561042
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||| ||| | ||||||||  |||| || ||||||||    
T  21560986 cgtttagagtaatattttatgtccgtctgtctgtttttttgttacgctgatgcatat 21561042  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 22117847 - 22117791
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||| ||| ||||| ||||  |||| || ||||||||    
T  22117847 cgtttagagtaatattttatgtccgtctgtttgtgtttttgttacgctgatgcatat 22117791  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 22829652 - 22829684
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  22829652 tagggatggcaatgggtacccaatgggtagggt 22829684  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 32655730 - 32655698
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  32655730 tagggatggcaatgggtacccaatgggtagggt 32655698  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 36518000 - 36517944
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||| ||| ||||| ||||  |||| || ||||||||    
T  36518000 cgtttagagtaatattttatgtccgtctgtttgtatttttgttacgctgatgcatat 36517944  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 42053476 - 42053444
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  42053476 tagggatggcaatgggtacccaatgggtagggt 42053444  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 42755243 - 42755275
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  42755243 tagggatggcaatgggtacccaatgggtagggt 42755275  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 43328493 - 43328549
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||| ||| | ||||||||  |||| || ||||||||    
T  43328493 cgtttagagtaatattttatgtccgtctgtctgtttttttgttacgctgatgcatat 43328549  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 51448570 - 51448626
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||| ||| | ||||||||  |||| || ||||||||    
T  51448570 cgtttagagtaatattttatgtccgtctgtctgtttttttgttacgctgatgcatat 51448626  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 52180986 - 52180954
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  52180986 tagggatggcaatgggtacccaatgggtagggt 52180954  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 428
Target Start/End: Original strand, 14645208 - 14645241
Alignment:
Q  395 ctagggatggcaatgagtacccaatgggtagggt 428  Q
    ||||||||||||||| ||||||||||||||||||    
T  14645208 ctagggatggcaatgggtacccaatgggtagggt 14645241  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 287882 - 287938
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    ||||||||||||||||| |||||||| | | ||||||||  |||| |||||||||||    
T  287882 cgtttagagtaatatttaatgtccatttgtctgtttttttgttacgctaatgcatat 287938  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 7282558 - 7282614
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||| ||| ||||| ||||  |||| || ||||||||    
T  7282558 cgtttagagtaatattttatgtccgtctgtttgtgtttttgttacgctgatgcatat 7282614  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 9698579 - 9698635
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    ||||||||||||||||||| |||| ||||| ||||||||  |||| | |||||||||    
T  9698579 cgtttagagtaatattttacgtccgtctatctgtttttttgttacgcgaatgcatat 9698635  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 15719396 - 15719364
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  15719396 tagggatggcaatgggtacccaatgggtagggt 15719364  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 26909332 - 26909277
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||| ||||||||||||||||| ||||| ||||||||  |||| |||||||||||    
T  26909332 cgtttaaagtaatattttatgtccgtctatctgtttttt-gttacgctaatgcatat 26909277  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 33613722 - 33613666
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||||||| | ||| ||||  |||| || ||||||||    
T  33613722 cgtttagagtaatattttatgtccatctgtctgtgtttttgttacgctgatgcatat 33613666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 37460496 - 37460552
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||| ||| | ||||||||  |||| || ||||||||    
T  37460496 cgtttagagtaatattttatgtccgtctgtctgtttttttgttacgctgatgcatat 37460552  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 18221 - 18165
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||| | | ||||| ||||||||  |||| |||||||||||    
T  18221 cgtttagagtaatattttatcttcgtctatctgtttttttgttacgctaatgcatat 18165  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 36854 - 36910
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||| ||||||||||| ||| | ||||||||  |||| |||||||||||    
T  36854 cgtttagagtaacattttatgtccgtctgtctgtttttttgttacgctaatgcatat 36910  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 240681 - 240649
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  240681 tagggatggcaatgggtacccaatgggtagggt 240649  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 246020 - 246076
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||| ||| | ||||||||  |||| || ||||||||    
T  246020 cgtttagagtaatattttatgtccgtctgtctgtttttttgttacgctgatgcatat 246076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 6337133 - 6337165
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  6337133 tagggatggcaatgggtacccaatgggtagggt 6337165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 11954860 - 11954805
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||| ||||||||||||||||| ||| ||||||||||  |||| |||||||||||    
T  11954860 cgtttaaagtaatattttatgtccgtctgtttgtttttt-gttacgctaatgcatat 11954805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 13534403 - 13534371
Alignment:
Q  396 tagggatggcaatgagtacccaatgggtagggt 428  Q
    |||||||||||||| ||||||||||||||||||    
T  13534403 tagggatggcaatgggtacccaatgggtagggt 13534371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 18310487 - 18310543
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||| ||| ||||| ||||  |||| || ||||||||    
T  18310487 cgtttagagtaatattttatgtccgtctgtttgtgtttttgttacgctgatgcatat 18310543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 34317703 - 34317759
Alignment:
Q  277 cgtttagagtaatattttatgtccatctatttgttttttaattacactaatgcatat 333  Q
    |||||||||||||||||||||||  ||| | ||||||||  |||| |||||||||||    
T  34317703 cgtttagagtaatattttatgtctgtctgtctgtttttttgttacgctaatgcatat 34317759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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