View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19504_low_3 (Length: 328)
Name: NF19504_low_3
Description: NF19504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19504_low_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 328
Target Start/End: Original strand, 26944564 - 26944880
Alignment:
| Q |
17 |
caaagggtgagaaaaccaaaatctactaaacagaagctataagaattagcatatatgtttttcttacaatgaagatacaatgctattacttatgtttttc |
116 |
Q |
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| T |
26944564 |
caaagggtgagaaaaccaaaatctactaaacagaagctataagaattagcatatatgtttttcttacaatgaagatacaatgctattacttatgtttttc |
26944663 |
T |
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| Q |
117 |
ttacatggaaatgttaatt-----ttagtagaaaatattgaactatggacctcctttaattaatttgaaatgggtaattggcagatgaacaaagcctcaa |
211 |
Q |
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| T |
26944664 |
ttacatgcaaatgttaattatattttagtagaaaatattgaactatggacctcctttaattaatttcaaatgggtaattggcagatgaacaaagcctcaa |
26944763 |
T |
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| Q |
212 |
ttattgtggacgcctccaaatacatagaagagttgaagcaaaaagtggagggaatgaactctgagttaggaaacgttgagtcctcaacttctcaaatgga |
311 |
Q |
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| T |
26944764 |
ttattgtggacgcctccaaatacataaaagagttgaagcaaaaagtggagggaatgaactctgagttaggaaacgttgagtcctcaacttctcaaatgga |
26944863 |
T |
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| Q |
312 |
tgagcaacctatggtac |
328 |
Q |
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| T |
26944864 |
tgagcaacctatggtac |
26944880 |
T |
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