View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19504_low_4 (Length: 250)
Name: NF19504_low_4
Description: NF19504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19504_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 4974441 - 4974680
Alignment:
| Q |
1 |
ttcttacatgacaggagaagcataggctacatgattgatccaagtctgcaatcattcaaggacaatgaacttgatgtaatttgtgaagtgattcaagggt |
100 |
Q |
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| T |
4974441 |
ttcttacatgacaggagaagcataggctacatgattgatccaagtctgcaatcattaaaggacaatgaacttgatgtaatttgtgaagtgattcaagggt |
4974540 |
T |
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| Q |
101 |
gcatccaacctgatccaaagatgagacctacaatgagagacataacttccagattaagggaagtgctttgtgtaacacctgagcaagctgttccaagact |
200 |
Q |
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| T |
4974541 |
gcatccaacctgatccaaagatgagacctacaatgagagacataacttccagattaagggaagtgttttgtgtaacacctgagcaagctgttccaagact |
4974640 |
T |
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| Q |
201 |
ctcaccactatggtgggctgaacttgagatattatctgtg |
240 |
Q |
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| T |
4974641 |
ctcaccactatggtgggctgaacttgagatattatctgtg |
4974680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 4992349 - 4992588
Alignment:
| Q |
1 |
ttcttacatgacaggagaagcataggctacatgattgatccaagtctgcaatcattcaaggacaatgaacttgatgtaatttgtgaagtgattcaagggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4992349 |
ttcttacatgacaggagaagcataggctacatgattgatccaagtctgcaatcattaaaggacaatgaacttgatgtaatttgtgaagtgattcaagggt |
4992448 |
T |
|
| Q |
101 |
gcatccaacctgatccaaagatgagacctacaatgagagacataacttccagattaagggaagtgctttgtgtaacacctgagcaagctgttccaagact |
200 |
Q |
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| T |
4992449 |
gcatccaacctgatccaaagatgagacctacaatgagagacataacttccagattaagggaagtgttttgtgtaacacctgagcaagctgttccaagact |
4992548 |
T |
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| Q |
201 |
ctcaccactatggtgggctgaacttgagatattatctgtg |
240 |
Q |
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| T |
4992549 |
ctcaccactatggtgggctgaacttgagatattatctgtg |
4992588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 35831314 - 35831241
Alignment:
| Q |
157 |
agggaagtgctttgtgtaacacctgagcaagctgttccaagactctcaccactatggtgggctgaacttgagat |
230 |
Q |
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| T |
35831314 |
agggaagtgctttctatatcacctgatcaagcagtaccaagactttctccactctggtgggctgaactcgagat |
35831241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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