View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19504_low_5 (Length: 237)
Name: NF19504_low_5
Description: NF19504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19504_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4974312 - 4974092
Alignment:
| Q |
1 |
tgtatcaactattaagtatctcttttatatgaaactaatcataacatcaaaatatacatgaaatgaaaatagaaaacattttttcaaatcaagatcgatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4974312 |
tgtatcaactattaagtatctcttttatatgaaactaatcataacatcaaaatatacatgaaatgaaaatagaaaacattttttcaaatcaagatcgatt |
4974213 |
T |
|
| Q |
101 |
gatttcaaaacgatatttctttcaaacttacccagtgcacaagatttccttgctcttcagaatgaggcaatttaccagaaatgatttctagcaacaatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4974212 |
gatttcaaaacgatatttctttcaaacttacccagtgcacaagatttccttgctcttcagaatgaggcaatttaccagaaatgatttctagcaacaatat |
4974113 |
T |
|
| Q |
201 |
tccaaaatcatagacattttg |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
4974112 |
tccaaaatcatagacattttg |
4974092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4992220 - 4992000
Alignment:
| Q |
1 |
tgtatcaactattaagtatctcttttatatgaaactaatcataacatcaaaatatacatgaaatgaaaatagaaaacattttttcaaatcaagatcgatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4992220 |
tgtatcaactattaagtatctcttttatatgaaactaatcataacatcaaaatatacatgaaatgaaaatagaaaacattttttcaaatcaagatcgatt |
4992121 |
T |
|
| Q |
101 |
gatttcaaaacgatatttctttcaaacttacccagtgcacaagatttccttgctcttcagaatgaggcaatttaccagaaatgatttctagcaacaatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4992120 |
gatttcaaaacgatatttctttcaaacttacccagtgcacaagatttccttgctcttcagaatgaggcaatttaccagaaatgatttctagcaacaatat |
4992021 |
T |
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| Q |
201 |
tccaaaatcatagacattttg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
4992020 |
tccaaaatcatagacattttg |
4992000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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