View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19505_high_14 (Length: 330)
Name: NF19505_high_14
Description: NF19505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19505_high_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 183; Significance: 6e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 136 - 318
Target Start/End: Original strand, 45009307 - 45009489
Alignment:
| Q |
136 |
aggctccttggctggtccaacagatagtatcttaggatgacacagcttccttaactttcccactacatgcacaacgtctatgtctcctgttaaggtcaat |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45009307 |
aggctccttggctggtccaacagatagtatcttaggatgacacagcttccttaactttcccactacatgcacaacgtctatgtctcctgttaaggtcaat |
45009406 |
T |
|
| Q |
236 |
ttctggtccttcatatccaaagaaactgactcaacccctgcaaaaaccatggttaaatttattctctttgattttatgagtat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45009407 |
ttctggtccttcatatccaaagaaactgactcaacccctgcaaaaaccatggttaaatttattctctttgattttatgagtat |
45009489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 45009192 - 45009253
Alignment:
| Q |
21 |
gtcccatcattataggataatgataggtttcacaaaccttcacaaaaccaggtgctgctgaa |
82 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45009192 |
gtcccatcattataggataatgataggtttcacaaaccttcacaaaaccaggtgctgctgaa |
45009253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 45041265 - 45041325
Alignment:
| Q |
218 |
tctcctgttaaggtcaatttctggtccttcatatccaaagaaactgactcaacccctgcaa |
278 |
Q |
| |
|
|||||| ||||||||| ||||| ||| ||||| || | |||||||||||||||||||||| |
|
|
| T |
45041265 |
tctcctattaaggtcattttcttgtctttcatgtctattgaaactgactcaacccctgcaa |
45041325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 279
Target Start/End: Original strand, 17861666 - 17861729
Alignment:
| Q |
216 |
tgtctcctgttaaggtcaatttctggtccttcatatccaaagaaactgactcaacccctgcaaa |
279 |
Q |
| |
|
||||||| |||||||| ||||||| ||| ||||| |||| ||||||||| || ||||||||||| |
|
|
| T |
17861666 |
tgtctccagttaaggttaatttcttgtctttcatgtccacagaaactgattctacccctgcaaa |
17861729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 279
Target Start/End: Original strand, 17872268 - 17872331
Alignment:
| Q |
216 |
tgtctcctgttaaggtcaatttctggtccttcatatccaaagaaactgactcaacccctgcaaa |
279 |
Q |
| |
|
||||||| |||||||| ||||||| ||| ||||| |||| ||||||||| || ||||||||||| |
|
|
| T |
17872268 |
tgtctccagttaaggttaatttcttgtctttcatgtccacagaaactgattctacccctgcaaa |
17872331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University