View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19505_high_22 (Length: 250)

Name: NF19505_high_22
Description: NF19505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19505_high_22
NF19505_high_22
[»] chr8 (12 HSPs)
chr8 (161-246)||(43202104-43202189)
chr8 (172-246)||(31844376-31844450)
chr8 (175-246)||(24306162-24306233)
chr8 (163-243)||(31845819-31845899)
chr8 (174-237)||(24305070-24305133)
chr8 (163-219)||(35799486-35799542)
chr8 (172-244)||(38697878-38697950)
chr8 (172-243)||(28291306-28291377)
chr8 (172-246)||(43203314-43203388)
chr8 (163-219)||(20180699-20180755)
chr8 (163-219)||(39173151-39173207)
chr8 (163-219)||(39174752-39174808)
[»] chr7 (11 HSPs)
chr7 (173-246)||(10957189-10957262)
chr7 (172-245)||(43442797-43442870)
chr7 (173-246)||(26135649-26135722)
chr7 (171-243)||(43441357-43441429)
chr7 (180-246)||(8426928-8426994)
chr7 (172-246)||(10955853-10955927)
chr7 (173-246)||(26146742-26146815)
chr7 (173-243)||(669423-669493)
chr7 (209-246)||(2414757-2414794)
chr7 (163-228)||(44372755-44372820)
chr7 (163-228)||(44381611-44381676)
[»] chr4 (13 HSPs)
chr4 (173-246)||(39057802-39057875)
chr4 (173-246)||(35350143-35350216)
chr4 (172-246)||(36846593-36846667)
chr4 (163-246)||(26629799-26629882)
chr4 (172-246)||(35348805-35348879)
chr4 (165-246)||(1521221-1521302)
chr4 (163-246)||(1519819-1519902)
chr4 (172-246)||(26631253-26631327)
chr4 (172-246)||(39056433-39056507)
chr4 (176-250)||(26425803-26425877)
chr4 (163-246)||(36845417-36845501)
chr4 (173-242)||(37106285-37106354)
chr4 (163-228)||(44498486-44498551)
[»] chr2 (9 HSPs)
chr2 (172-243)||(1309409-1309480)
chr2 (173-246)||(1147757-1147830)
chr2 (173-246)||(1149223-1149296)
chr2 (172-239)||(1310702-1310769)
chr2 (196-242)||(102414-102460)
chr2 (204-246)||(8320790-8320832)
chr2 (173-242)||(25559294-25559363)
chr2 (173-242)||(25561694-25561763)
chr2 (169-241)||(29080193-29080265)
[»] chr5 (11 HSPs)
chr5 (172-246)||(10735771-10735845)
chr5 (172-246)||(10736972-10737046)
chr5 (173-246)||(28702577-28702650)
chr5 (163-241)||(4127278-4127356)
chr5 (170-246)||(35081469-35081545)
chr5 (189-246)||(1104019-1104076)
chr5 (173-246)||(4124764-4124838)
chr5 (173-243)||(41144553-41144623)
chr5 (169-246)||(1102626-1102703)
chr5 (182-243)||(35047430-35047491)
chr5 (175-235)||(13519491-13519551)
[»] chr1 (8 HSPs)
chr1 (172-246)||(7306289-7306363)
chr1 (163-243)||(48527545-48527625)
chr1 (165-246)||(26287811-26287892)
chr1 (163-246)||(26286420-26286503)
chr1 (172-246)||(48528931-48529005)
chr1 (163-246)||(5613110-5613193)
chr1 (165-246)||(5611734-5611815)
chr1 (175-240)||(9482471-9482536)
[»] scaffold0219 (1 HSPs)
scaffold0219 (172-245)||(8224-8297)
[»] chr3 (2 HSPs)
chr3 (172-244)||(37416472-37416544)
chr3 (172-250)||(37414999-37415077)
[»] chr6 (7 HSPs)
chr6 (173-243)||(11968512-11968582)
chr6 (173-246)||(136635-136708)
chr6 (173-246)||(30231486-30231559)
chr6 (173-246)||(138241-138314)
chr6 (173-246)||(146262-146335)
chr6 (173-246)||(30232941-30233014)
chr6 (176-245)||(11967257-11967326)
[»] scaffold0092 (1 HSPs)
scaffold0092 (182-246)||(39832-39896)
[»] scaffold2071 (1 HSPs)
scaffold2071 (170-242)||(713-785)


Alignment Details
Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 43202189 - 43202104
Alignment:
Q  161 gtgcaaaagttgagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    ||||||| ||||||||||||||| ||| |||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||    
T  43202189 gtgcaaacgttgagggaccaaaatgttgattttacgagttatgggactaaaatgaaaacaacaaattacttaggggatcaaaagtc 43202104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 31844450 - 31844376
Alignment:
Q  172 gagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    |||||||||||| |||||||||||||||||  |||||||||||||||||| |||||||||  |||||||||||||    
T  31844450 gagggaccaaaatgttaattttacgagttacgggactaaaatgaaaacaacaaattactttagggaccaaaagtc 31844376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 24306162 - 24306233
Alignment:
Q  175 ggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    |||||||||  || |||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||    
T  24306162 ggaccaaaatattgattttacgagttatgggaccaaaatgaaaacaagaaattacttagggaaccaaaagtc 24306233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 31845819 - 31845899
Alignment:
Q  163 gcaaaagttgagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaa 243  Q
    ||||| ||||||||||||||| ||| |||||| ||||||| |||| ||||||||||||| || ||||||| ||||||||||    
T  31845819 gcaaacgttgagggaccaaaatgttgattttatgagttatgggaccaaaatgaaaacaacaatttacttaagggaccaaaa 31845899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 24305133 - 24305070
Alignment:
Q  174 gggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttagggga 237  Q
    |||||||||| ||| ||||||| |||||||| || |||||||||||||| ||||||||||||||    
T  24305133 gggaccaaaatgttgattttactagttatagaaccaaaatgaaaacaaggaattacttagggga 24305070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 35799542 - 35799486
Alignment:
Q  163 gcaaaagttgagggaccaaaacgttaattttacgagttataggactaaaatgaaaac 219  Q
    ||||||||||||||||||||| | |||||||| || ||||| ||| |||||||||||    
T  35799542 gcaaaagttgagggaccaaaatgataattttaagacttataagaccaaaatgaaaac 35799486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 38697950 - 38697878
Alignment:
Q  172 gagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaag 244  Q
    |||||||||||| ||| ||||||| |||||| | || |||||| ||| |  ||||||||||||||||||||||    
T  38697950 gagggaccaaaatgttgattttacaagttatggaaccaaaatgtaaatagaaaattacttaggggaccaaaag 38697878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 28291377 - 28291306
Alignment:
Q  172 gagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaa 243  Q
    |||||||| ||| ||| ||||||||| |||| |||| |||||||||||    ||||||||||||||||||||    
T  28291377 gagggaccgaaatgttgattttacgaattatgggaccaaaatgaaaactgataattacttaggggaccaaaa 28291306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 43203314 - 43203388
Alignment:
Q  172 gagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    |||||||  ||| ||| |||||||||||||| |||| |||||||||| || |||||| |||  ||||||||||||    
T  43203314 gagggacggaaatgttgattttacgagttatgggaccaaaatgaaaataacaaattatttaatggaccaaaagtc 43203388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 20180699 - 20180755
Alignment:
Q  163 gcaaaagttgagggaccaaaacgttaattttacgagttataggactaaaatgaaaac 219  Q
    |||||||| |||||||||||| | |||||||| |||||||  ||| |||||||||||    
T  20180699 gcaaaagtcgagggaccaaaatgataattttaagagttatgagaccaaaatgaaaac 20180755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 39173207 - 39173151
Alignment:
Q  163 gcaaaagttgagggaccaaaacgttaattttacgagttataggactaaaatgaaaac 219  Q
    ||||||||||||||||||||| |   |||||| || ||||||||| |||||||||||    
T  39173207 gcaaaagttgagggaccaaaatgacgattttaagacttataggaccaaaatgaaaac 39173151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 39174752 - 39174808
Alignment:
Q  163 gcaaaagttgagggaccaaaacgttaattttacgagttataggactaaaatgaaaac 219  Q
    ||||||||||||||||||||| | | ||||||  | ||||||||| |||||||||||    
T  39174752 gcaaaagttgagggaccaaaatgatgattttaaaacttataggaccaaaatgaaaac 39174808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 10957189 - 10957262
Alignment:
Q  173 agggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||    
T  10957189 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacttaggggaccaaaagtc 10957262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 43442797 - 43442870
Alignment:
Q  172 gagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagt 245  Q
    |||||||||||| ||| |||||||||||||| |||| || |||||||||| |||||||||||||||||||||||    
T  43442797 gagggaccaaaatgttgattttacgagttatgggaccaatatgaaaacaacaaattacttaggggaccaaaagt 43442870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 26135722 - 26135649
Alignment:
Q  173 agggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    ||||||||||||||| ||||||  |||||| |||| ||||||||||||  |||||| |||||||||||||||||    
T  26135722 agggaccaaaacgttgattttagaagttatgggaccaaaatgaaaacatcaaattagttaggggaccaaaagtc 26135649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 43441429 - 43441357
Alignment:
Q  171 tgagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaa 243  Q
    |||||||||||||  ||||||||| |||||||  ||| ||||||||||||| || ||||||||||||||||||    
T  43441429 tgagggaccaaaatattaattttatgagttatgagaccaaaatgaaaacaacaatttacttaggggaccaaaa 43441357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 8426928 - 8426994
Alignment:
Q  180 aaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    |||||| | |||||||||| |||| ||| |||||||||||| ||||||| ||||||||| |||||||    
T  8426928 aaaacgatgattttacgagctataagaccaaaatgaaaacatgaaattaattaggggactaaaagtc 8426994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 10955927 - 10955853
Alignment:
Q  172 gagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    ||||||| |||||||| ||||||  |||||| | |  ||||||||||||| |||||||||| |||||||||||||    
T  10955927 gagggactaaaacgttgattttataagttatggaatcaaaatgaaaacaacaaattacttaagggaccaaaagtc 10955853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 26146742 - 26146815
Alignment:
Q  173 agggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    ||||||| |||| || ||||||  | ||||||||  ||||||||||||| |||||| |||||||||||||||||    
T  26146742 agggaccgaaacattgattttaaaatttataggatcaaaatgaaaacaacaaattagttaggggaccaaaagtc 26146815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 669423 - 669493
Alignment:
Q  173 agggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaa 243  Q
    ||||||| ||| ||| ||||||||| |||| |||| |||||||||||    ||||||||||||||||||||    
T  669423 agggaccgaaatgttgattttacgaattatgggaccaaaatgaaaactgataattacttaggggaccaaaa 669493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 2414794 - 2414757
Alignment:
Q  209 aaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    |||||||||||||||||||||||  |||||||||||||    
T  2414794 aaaatgaaaacaagaaattacttgagggaccaaaagtc 2414757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 44372820 - 44372755
Alignment:
Q  163 gcaaaagttgagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaatta 228  Q
    |||||||| |||||||||||| | |||||||| |||||||  ||| |||||||||||  |||||||    
T  44372820 gcaaaagtcgagggaccaaaatgataattttaagagttatgagaccaaaatgaaaactcgaaatta 44372755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 44381676 - 44381611
Alignment:
Q  163 gcaaaagttgagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaatta 228  Q
    |||||||| |||||||||||| | |||||||| |||||||  ||| |||||||||||  |||||||    
T  44381676 gcaaaagtcgagggaccaaaatgataattttaagagttatgagaccaaaatgaaaactcgaaatta 44381611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 39057802 - 39057875
Alignment:
Q  173 agggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||    
T  39057802 agggaccaaaacgttaattttacgagttataggacaaaaataaaaacaacaaattacttaggggaccaaaagtc 39057875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 35350143 - 35350216
Alignment:
Q  173 agggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    ||||||||||||||||||||||||||||||  ||  ||||||||||||| ||||||||||||||||||||||||    
T  35350143 agggaccaaaacgttaattttacgagttatgagatcaaaatgaaaacaacaaattacttaggggaccaaaagtc 35350216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 36846593 - 36846667
Alignment:
Q  172 gagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    |||||||||||| ||| |||||||||||||| |||| ||||||||||||| |||||||||||||| |||||||||    
T  36846593 gagggaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttagggggccaaaagtc 36846667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 26629882 - 26629799
Alignment:
Q  163 gcaaaagttgagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    ||||| ||||||||||||||| ||| |||||| ||||||| |||| ||||||||||||| || ||||||| |||||||||||||    
T  26629882 gcaaacgttgagggaccaaaatgttgattttatgagttatgggaccaaaatgaaaacaacaatttacttaagggaccaaaagtc 26629799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 35348879 - 35348805
Alignment:
Q  172 gagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    ||||||| |||||||| ||||||| |||||| |||| ||||||||||||| |||||||||| |||||||||||||    
T  35348879 gagggactaaaacgttgattttacaagttatgggaccaaaatgaaaacaacaaattacttaagggaccaaaagtc 35348805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 165 - 246
Target Start/End: Original strand, 1521221 - 1521302
Alignment:
Q  165 aaaagttgagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    ||||||||||||||||||| ||| ||||||||| |||| |||  ||||||||||||| |||||| |||| ||||||||||||    
T  1521221 aaaagttgagggaccaaaatgttgattttacgaattatgggatcaaaatgaaaacaacaaattagttagaggaccaaaagtc 1521302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 1519902 - 1519819
Alignment:
Q  163 gcaaaagttgagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    ||||| ||||||||||||| | ||| ||||||||| |||| |||| ||||||||||| | |||||| |||||||||||||||||    
T  1519902 gcaaatgttgagggaccaatatgttgattttacgaattatgggaccaaaatgaaaacgacaaattagttaggggaccaaaagtc 1519819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 26631253 - 26631327
Alignment:
Q  172 gagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    |||| ||||||| ||| ||||||||||||||  ||| |||||||||| || ||||||||| ||||||||||||||    
T  26631253 gaggaaccaaaatgttgattttacgagttatgagaccaaaatgaaaataacaaattacttgggggaccaaaagtc 26631327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 39056507 - 39056433
Alignment:
Q  172 gagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    ||||||| |||||||| ||||||| | ||||  ||| ||||||||||||| |||||||||| |||||||||||||    
T  39056507 gagggactaaaacgttgattttacaaattatgagaccaaaatgaaaacaacaaattacttaagggaccaaaagtc 39056433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 26425803 - 26425877
Alignment:
Q  176 gaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtctaat 250  Q
    ||||||||  || |||||||||||||| | || |||||||||||   |||||||||||||||||||||| |||||    
T  26425803 gaccaaaatattgattttacgagttattgtaccaaaatgaaaactgaaaattacttaggggaccaaaagactaat 26425877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 36845501 - 36845417
Alignment:
Q  163 gcaaaagttgagggaccaaaacgtta-attttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    ||||| ||||||| ||||||| |||  |||||| ||||||| | |||||||||||||||| || |||| |||| |||||||||||    
T  36845501 gcaaacgttgaggaaccaaaatgtttgattttatgagttatggaactaaaatgaaaacaacaatttacctaggtgaccaaaagtc 36845417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 37106285 - 37106354
Alignment:
Q  173 agggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaa 242  Q
    |||||||||| |||| ||||||  | |||| |||| ||||| ||||||| |||||| |||||||||||||    
T  37106285 agggaccaaatcgttgattttagaacttatgggaccaaaataaaaacaacaaattagttaggggaccaaa 37106354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 44498551 - 44498486
Alignment:
Q  163 gcaaaagttgagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaatta 228  Q
    ||||||||||||||||||||| | | |||||| ||||||| |||| |||| ||||||  |||||||    
T  44498551 gcaaaagttgagggaccaaaatgatgattttaagagttatgggaccaaaacgaaaactcgaaatta 44498486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 1309480 - 1309409
Alignment:
Q  172 gagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaa 243  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  1309480 gagggaccaaaatgttaattttacgagttatatgactaaaatgaaaacaacaaattacttaggggaccaaaa 1309409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 1147830 - 1147757
Alignment:
Q  173 agggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    ||||||| ||||||| ||||||  |||||| |||||||||||||||||| |||||| |||||||||||||||||    
T  1147830 agggaccgaaacgttgattttagaagttatgggactaaaatgaaaacaacaaattagttaggggaccaaaagtc 1147757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 1149223 - 1149296
Alignment:
Q  173 agggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    ||||||||||||||| ||||||  |||||| |||| ||||||||||||| |||||| |||||||||||||||||    
T  1149223 agggaccaaaacgttgattttagaagttatgggaccaaaatgaaaacaacaaattagttaggggaccaaaagtc 1149296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 1310702 - 1310769
Alignment:
Q  172 gagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggacc 239  Q
    |||||||||||| ||| ||||||||||||||  || |||||||||||||| ||||||||| |||||||    
T  1310702 gagggaccaaaatgttgattttacgagttatgagattaaaatgaaaacaacaaattacttcggggacc 1310769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 102414 - 102460
Alignment:
Q  196 gagttataggactaaaatgaaaacaagaaattacttaggggaccaaa 242  Q
    ||||||| |||| |||||||||||||||||||| |||||||||||||    
T  102414 gagttatgggaccaaaatgaaaacaagaaattagttaggggaccaaa 102460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 8320832 - 8320790
Alignment:
Q  204 ggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    |||| |||||| |||||||||||||||||||||||||||||||    
T  8320832 ggaccaaaatgtaaacaagaaattacttaggggaccaaaagtc 8320790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 25559363 - 25559294
Alignment:
Q  173 agggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaa 242  Q
    |||||||||| |||| ||||||  | |||| |||| ||||| ||||||| |||||| |||||||||||||    
T  25559363 agggaccaaatcgttgattttagaacttatgggaccaaaataaaaacaacaaattagttaggggaccaaa 25559294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 25561694 - 25561763
Alignment:
Q  173 agggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaa 242  Q
    |||||||||| |||| ||||||  | |||| |||| ||||||||||||| |||||| ||||| |||||||    
T  25561694 agggaccaaatcgttgattttagaatttatgggaccaaaatgaaaacaacaaattagttaggcgaccaaa 25561763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 29080193 - 29080265
Alignment:
Q  169 gttgagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaa 241  Q
    |||||||||||||||||| ||||||| ||| |||   |  |||||||||| ||||||||| |||||| |||||    
T  29080193 gttgagggaccaaaacgtgaattttaagagctatgcaatcaaaatgaaaataagaaattaattagggaaccaa 29080265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 10735845 - 10735771
Alignment:
Q  172 gagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    |||||||||||||||| |||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||    
T  10735845 gagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaagtaattacttaggggaccaaaagtc 10735771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 10736972 - 10737046
Alignment:
Q  172 gagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    |||||||||||| ||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  10736972 gagggaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaagaaattacttaggggaccaaaagtc 10737046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 28702650 - 28702577
Alignment:
Q  173 agggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||| |||||||    
T  28702650 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacttaggggacaaaaagtc 28702577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 4127278 - 4127356
Alignment:
Q  163 gcaaaagttgagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaa 241  Q
    ||||| ||||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||| |||||||    
T  4127278 gcaaacgttgaaggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacttagaggaccaa 4127356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 35081469 - 35081545
Alignment:
Q  170 ttgagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    |||| ||||||||||||| |||||||||||||| |||| |||||||||||||  |||||||||||||||||||||||    
T  35081469 ttgaaggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaaacaattacttaggggaccaaaagtc 35081545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 1104019 - 1104076
Alignment:
Q  189 attttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    |||||||||||||| |||||||||||  ||||| ||||||||||||||||||||||||    
T  1104019 attttacgagttatgggactaaaatgttaacaacaaattacttaggggaccaaaagtc 1104076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 4124838 - 4124764
Alignment:
Q  173 agggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaa-ttacttaggggaccaaaagtc 246  Q
    ||||||||||||||| |||||| || |||| | || ||||||||||||||||| |||||||| ||||||||||||    
T  4124838 agggaccaaaacgttgattttatgaattatggaaccaaaatgaaaacaagaaatttacttagaggaccaaaagtc 4124764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 41144553 - 41144623
Alignment:
Q  173 agggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaa 243  Q
    ||||||||||||||| ||||||  | |||| |||| ||||||||||||| |||||| ||||||||||||||    
T  41144553 agggaccaaaacgttgattttagaatttatgggaccaaaatgaaaacaacaaattaattaggggaccaaaa 41144623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 246
Target Start/End: Complemental strand, 1102703 - 1102626
Alignment:
Q  169 gttgagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    ||||||||||| ||| ||| |||||||||||||| |||| || ||| |||||| |||||| ||| |||||||||||||    
T  1102703 gttgagggacctaaatgttgattttacgagttatgggaccaatatgtaaacaacaaattagttatgggaccaaaagtc 1102626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 35047491 - 35047430
Alignment:
Q  182 aacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaa 243  Q
    |||||| |||||||||||||| |||| |||||||||||| ||||| |||||||||| |||||    
T  35047491 aacgttgattttacgagttatgggaccaaaatgaaaacacgaaataacttaggggatcaaaa 35047430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 13519551 - 13519491
Alignment:
Q  175 ggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggg 235  Q
    ||||||||| ||| ||||| |||||||| ||||||||||| ||||||||||||| ||||||    
T  13519551 ggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattagttaggg 13519491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 7306289 - 7306363
Alignment:
Q  172 gagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||| || ||||||||||    
T  7306289 gagggaccaaaatgttaattttacgagttataggaccaaaatgaaaacaacaaattacttaaggaaccaaaagtc 7306363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 48527625 - 48527545
Alignment:
Q  163 gcaaaagttgagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaa 243  Q
    ||||| ||| ||||||||||| |||||||||||||||||| |||| |||||| |||||| |||||||||||||||||||||    
T  48527625 gcaaacgttaagggaccaaaatgttaattttacgagttatgggaccaaaatgtaaacaacaaattacttaggggaccaaaa 48527545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 246
Target Start/End: Original strand, 26287811 - 26287892
Alignment:
Q  165 aaaagttgagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    ||||||||||||||||||| ||| ||||||||| |||| |||| ||||||||||||| |||||| |||| ||||||||||||    
T  26287811 aaaagttgagggaccaaaatgttgattttacgaattatgggaccaaaatgaaaacaacaaattagttagaggaccaaaagtc 26287892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 26286503 - 26286420
Alignment:
Q  163 gcaaaagttgagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    ||||| ||||||||||||| | ||| ||||||||| |||| |||| ||||||||||| | |||||| |||||||||||||||||    
T  26286503 gcaaacgttgagggaccaatatgttgattttacgaattatgggaccaaaatgaaaacgacaaattagttaggggaccaaaagtc 26286420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 48528931 - 48529005
Alignment:
Q  172 gagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    ||||||| |||| ||| |||||||||||||| |||| |||||| |||||| ||||||||| ||||||||||||||    
T  48528931 gagggactaaaatgttgattttacgagttatgggaccaaaatgtaaacaacaaattacttgggggaccaaaagtc 48529005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 5613110 - 5613193
Alignment:
Q  163 gcaaaagttgagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    ||||| ||||||||||||| | ||| ||||||||| |||| |||| ||||||||||| | |||||| |||||||| ||||||||    
T  5613110 gcaaacgttgagggaccaatatgttgattttacgaattatgggaccaaaatgaaaacgacaaattagttaggggatcaaaagtc 5613193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 246
Target Start/End: Complemental strand, 5611815 - 5611734
Alignment:
Q  165 aaaagttgagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    ||||||||||| ||||||| ||| ||||||| | |||| |||| ||||||||||||| |||||| |||  ||||||||||||    
T  5611815 aaaagttgaggcaccaaaatgttgattttacaaattatgggaccaaaatgaaaacaacaaattagttaaaggaccaaaagtc 5611734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 9482536 - 9482471
Alignment:
Q  175 ggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggacca 240  Q
    ||||||||| ||| |||||||||| |||  ||||||||| |||||  ||||||| |||||||||||    
T  9482536 ggaccaaaatgttgattttacgagatatgtgactaaaataaaaactggaaattaattaggggacca 9482471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 8224 - 8297
Alignment:
Q  172 gagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagt 245  Q
    |||||||||||| ||| |||||||||||||| |||| |||||| ||||||  ||||||||||||||||||||||    
T  8224 gagggaccaaaatgttgattttacgagttatgggaccaaaatgtaaacaaagaattacttaggggaccaaaagt 8297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 244
Target Start/End: Original strand, 37416472 - 37416544
Alignment:
Q  172 gagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaag 244  Q
    |||||||||||| ||| |||||| ||||||| | || ||||||||||||| ||||||||||||||||||||||    
T  37416472 gagggaccaaaatgttgattttatgagttatggaaccaaaatgaaaacaacaaattacttaggggaccaaaag 37416544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 37415077 - 37414999
Alignment:
Q  172 gagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtctaat 250  Q
    |||| ||||||| ||| ||||||||||||||  ||| |||||||||| || |||||||||| |||||||||||||||||    
T  37415077 gaggaaccaaaatgttgattttacgagttatgagaccaaaatgaaaataacaaattacttaagggaccaaaagtctaat 37414999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 11968512 - 11968582
Alignment:
Q  173 agggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaa 243  Q
    |||||||||||||||||||||||  |||||  ||| ||||||||||||| |||||| ||||||||||||||    
T  11968512 agggaccaaaacgttaattttacaggttatgagaccaaaatgaaaacaacaaattagttaggggaccaaaa 11968582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 136708 - 136635
Alignment:
Q  173 agggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    ||||||||||||||| ||||||  |||||| |||||||||| ||||||| |||||| ||||||||| |||||||    
T  136708 agggaccaaaacgttgattttaaaagttatgggactaaaataaaaacaacaaattagttaggggacgaaaagtc 136635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 30231559 - 30231486
Alignment:
Q  173 agggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    ||||||||||||||| ||||||  |||||| |||| ||||||||||||| |||||| ||| |||||||||||||    
T  30231559 agggaccaaaacgttgattttagaagttatgggaccaaaatgaaaacaacaaattagttaagggaccaaaagtc 30231486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 138241 - 138314
Alignment:
Q  173 agggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    ||||||| ||||||| ||||||  |||||| |||| ||||||||||||  |||||| |||||||||||||||||    
T  138241 agggaccgaaacgttgattttagaagttatgggaccaaaatgaaaacatcaaattagttaggggaccaaaagtc 138314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 146262 - 146335
Alignment:
Q  173 agggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    ||||||| ||||||| ||||||  |||||| |||| ||||||||||||  |||||| |||||||||||||||||    
T  146262 agggaccgaaacgttgattttagaagttatgggaccaaaatgaaaacatcaaattagttaggggaccaaaagtc 146335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 30232941 - 30233014
Alignment:
Q  173 agggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    ||||||| ||||||| ||||||  |||||| |||| ||||||||||||| ||| || |||||||||||||||||    
T  30232941 agggaccgaaacgttgattttagaagttatgggaccaaaatgaaaacaacaaactagttaggggaccaaaagtc 30233014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 11967326 - 11967257
Alignment:
Q  176 gaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagt 245  Q
    ||||||||| || |||||| |||||||   || ||||||||||||| |||||| ||||||||||||||||    
T  11967326 gaccaaaacattgattttatgagttatgaaaccaaaatgaaaacaacaaattaattaggggaccaaaagt 11967257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 39896 - 39832
Alignment:
Q  182 aacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaaagtc 246  Q
    |||||| ||||||| |||||| |||| |||||||||| || ||||||||||||||||||||||||    
T  39896 aacgttgattttacaagttatgggaccaaaatgaaaataataaattacttaggggaccaaaagtc 39832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2071 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 713 - 785
Alignment:
Q  170 ttgagggaccaaaacgttaattttacgagttataggactaaaatgaaaacaagaaattacttaggggaccaaa 242  Q
    ||||||||||||||| | | |||||  |||||| |||| |||||||||||  ||||||| |||| ||||||||    
T  713 ttgagggaccaaaacatgagttttattagttatgggaccaaaatgaaaactggaaattaattagaggaccaaa 785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University