View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19505_high_29 (Length: 234)
Name: NF19505_high_29
Description: NF19505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19505_high_29 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 3403439 - 3403207
Alignment:
| Q |
1 |
tttcacattattgtatatttcattcttcacagcttacattattcaatannnnnnnnnatgggggcaacacttaattttgcctaagnnnnnnnnttaaatt |
100 |
Q |
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| T |
3403439 |
tttcacattattgtatatttcattcttcacagcttacattattcaataattttttttatgggggcaacacttaattttgcctaagaaaaaaa-ttaaatt |
3403341 |
T |
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| Q |
101 |
tattcaaaaactcatgaagaaattagaatgttagtggggtcaactgcccccaatttgtttaacttggatctgtgcctgcaaagacatgttccaacgcccc |
200 |
Q |
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| T |
3403340 |
tattcaaaaactcatgaagaaattagaatgttagtggggtcaactgcccccaatttgcttaacttggatctgtgcctgcaaagacatcttccaacgcccc |
3403241 |
T |
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| Q |
201 |
acaccaaactcacatggtttctttcattcatgtt |
234 |
Q |
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| T |
3403240 |
acaccaaactcacatggtttctttcattcatgtt |
3403207 |
T |
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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 203733 - 203864
Alignment:
| Q |
5 |
acattattgtatatttcattcttcacagcttacattattcaatannnnnnnnnatgggggcaacacttaattttgcctaagnnnnnnnnttaaatttatt |
104 |
Q |
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| T |
203733 |
acattattgtatatttaattcttcaaaacttacattattcaataattttttg--tgggggcaactcttaattttacctaag--aaaaaattaaatttatt |
203828 |
T |
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| Q |
105 |
caaaaactcatgaagaaattagaatgttagtggggt |
140 |
Q |
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| T |
203829 |
aaaaaactcatgaaaaaattgaaatgttagtggggt |
203864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 26773436 - 26773480
Alignment:
| Q |
4 |
cacattattgtatatttcattcttcacagcttacattattcaata |
48 |
Q |
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| T |
26773436 |
cacattattgtatatttaactcttcacaagttacattattcaata |
26773480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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