View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19505_high_34 (Length: 219)
Name: NF19505_high_34
Description: NF19505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19505_high_34 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 25948765 - 25948960
Alignment:
| Q |
14 |
aagatatacattctaaaggacatcctcgccattgtagccacttcagttcatccggaagaaacttaccttccaaactcagattattgatctgaagcaacct |
113 |
Q |
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| T |
25948765 |
aagatatgcattctaaaggacatcctcgccattgtagccacttcagttcatccggaagaaacttaccttccaaactcagattattgatctgaagcaacct |
25948864 |
T |
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| Q |
114 |
caagctaaccatcggttcaaacgattttgtatcaagcataacttggttatatttctctgcttgaggttgaggaggataatttttactccacaggtt |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25948865 |
caagctaaccatcggttcaaacgattttgtatcaagcataacttggttatatttctctgcttgaggttgaggaggataatttttactccactggtt |
25948960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 25958843 - 25959009
Alignment:
| Q |
18 |
tatacattctaaaggacatcctcgccattgtagccacttcagttcatccggaagaaacttaccttccaaactcagattattgatctgaagcaacctcaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
25958843 |
tatacattctaaaggacatcctcgccattgtagccacttcagttcatctggaagaaacttaccttccaaactcagattatcgatctgaagcaatctcaag |
25958942 |
T |
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| Q |
118 |
ctaaccatcggttcaaacgattttgtatcaagcataacttggttatatttctctgcttgaggttgag |
184 |
Q |
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||||||| || ||||| || ||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
25958943 |
ttaaccattggctcaaaggactttgtatcaagtgtaacttggtcatatttctctgcttgaggttgag |
25959009 |
T |
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