View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19505_high_7 (Length: 416)
Name: NF19505_high_7
Description: NF19505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19505_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 77 - 403
Target Start/End: Complemental strand, 38196617 - 38196289
Alignment:
| Q |
77 |
cttttttcggatttatccatgagcgtatttgatcaaattattatcaatgtctgtgtcgtgtatccgtgtttatagtatttcacatactcaaagtcgaaga |
176 |
Q |
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| T |
38196617 |
cttttttcggatttatccatgagcgtatttgatcaaattattttcaatgtctgtgtcgtgtatccgtgtttgtagtatttcacatgctcaaagtcgaaga |
38196518 |
T |
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| Q |
177 |
aactatttatttctacactatctagaacttctttacctttcctattttctttttgtttcatctatata--ctcaagaatccacaaaagaagtacattttg |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38196517 |
aactatttatttctacactatctagaacttctttaccttacctattttctttttgtttcatctatatatactcaagaatccacaaaagaagtacattttg |
38196418 |
T |
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| Q |
275 |
ttttgctaacagatcacaattacctctaaatttgtttaggcaaatccaaagttgaaacacaccttgtgtttttcaaacgattttcaagtgacgtgttgca |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38196417 |
ctttgctaacagatcacaattacctctaaatttgtttaggcaaatccaaagttgaaacacaccttgtgtttttcaaacgattttcaagtgacgtgttgca |
38196318 |
T |
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| Q |
375 |
ttctagttcccaaatcccaataatgtttt |
403 |
Q |
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| T |
38196317 |
ttctagttcccaaatcccaataatgtttt |
38196289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 38196661 - 38196618
Alignment:
| Q |
10 |
aaaatcacatgtgaaatgtgaaatactgaaaatgtgaagactaa |
53 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38196661 |
aaaatcacatgtgaaatgtgaaatactgaaaatgtgaagactaa |
38196618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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