View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19505_low_10 (Length: 389)
Name: NF19505_low_10
Description: NF19505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19505_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 7 - 373
Target Start/End: Original strand, 50275148 - 50275514
Alignment:
| Q |
7 |
gtgagatgaaatcatttatgacaaggagagcacgagcagcttggtgcgcagtcaaaattcgacgcatctgttgcagtgtttgttgcctcaagatatccgc |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
50275148 |
gtgaaatgaaatcatttatgacaaggagagcacgagcagcttggtgcgcagtcaaaattcgacgcatctgttgcagtgtttgttgcctcaagatatctgc |
50275247 |
T |
|
| Q |
107 |
ctaagaaaaacaataatgctcaaaatgttatcactctcaattaaatgtggaataagataatgttgagtgatcaagattacattgtcttaattaattacct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275248 |
ctaagaaaaacaataatgctcaaaatgttatcactctcaattaaatgtggaataagataatgttgagtgatcaagattacattgtcttaattaattacct |
50275347 |
T |
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| Q |
207 |
gatgaatgaaagtctccagtctggaaagcttggccattgaaagagccatttgacccatatactcagcaacatttccagatccagtggacgtggaggaaag |
306 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50275348 |
gatgaatgaaagtctccagtgtggaaagcttggccattgaaagagccatttgacccatatactcaacaacatttccagatccagtggacgtggaggaaag |
50275447 |
T |
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| Q |
307 |
tgtctctgaaagagattgttgcaaagcttccatgccttgagataatgcatcttcagcctgttgacaa |
373 |
Q |
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||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50275448 |
tgtctctgaaagagattgttgcaaaccttccattccttgagataatgcatcttcagcctgttgacaa |
50275514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 7 - 373
Target Start/End: Original strand, 50279172 - 50279538
Alignment:
| Q |
7 |
gtgagatgaaatcatttatgacaaggagagcacgagcagcttggtgcgcagtcaaaattcgacgcatctgttgcagtgtttgttgcctcaagatatccgc |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
50279172 |
gtgaaatgaaatcatttatgacaaggagagcacgagcagcttggtgcgcagtcaaaattcgacgcatctgttgcagtgtttgttgcctcaagatatctgc |
50279271 |
T |
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| Q |
107 |
ctaagaaaaacaataatgctcaaaatgttatcactctcaattaaatgtggaataagataatgttgagtgatcaagattacattgtcttaattaattacct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279272 |
ctaagaaaaacaataatgctcaaaatgttatcactctcaattaaatgtggaataagataatgttgagtgatcaagattacattgtcttaattaattacct |
50279371 |
T |
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| Q |
207 |
gatgaatgaaagtctccagtctggaaagcttggccattgaaagagccatttgacccatatactcagcaacatttccagatccagtggacgtggaggaaag |
306 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50279372 |
gatgaatgaaagtctccagtgtggaaagcttggccattgaaagagccatttgacccatatactcaacaacatttccagatccagtggacgtggaggaaag |
50279471 |
T |
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| Q |
307 |
tgtctctgaaagagattgttgcaaagcttccatgccttgagataatgcatcttcagcctgttgacaa |
373 |
Q |
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||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50279472 |
tgtctctgaaagagattgttgcaaaccttccattccttgagataatgcatcttcagcctgttgacaa |
50279538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 366
Target Start/End: Complemental strand, 22610691 - 22610624
Alignment:
| Q |
299 |
gaggaaagtgtctctgaaagagattgttgcaaagcttccatgccttgagataatgcatcttcagcctg |
366 |
Q |
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||||||||||| ||| |||||||||||| ||| ||||||||||| |||||||| ||||| |||||||| |
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| T |
22610691 |
gaggaaagtgtttctaaaagagattgtttcaatgcttccatgccgtgagataaagcatcctcagcctg |
22610624 |
T |
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