View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19505_low_11 (Length: 383)
Name: NF19505_low_11
Description: NF19505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19505_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 101 - 374
Target Start/End: Original strand, 22563813 - 22564086
Alignment:
| Q |
101 |
taaatattgtaagtagaatattcaataatccatcaagaaattataactagacatatactcaataagacaatttacatggcaacttcaggtttatccatca |
200 |
Q |
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| T |
22563813 |
taaatattgtaagtagaatattcaataatccatctagaaattataactagacatatactcaataagacaatttacatggcaacttcaggtttatccatca |
22563912 |
T |
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| Q |
201 |
gaaaaagctaaatattactctcttcaacataaacatnnnnnnntataaataacactgttccttcacttaaaatcaaaattaaacactaaatcgtggtttc |
300 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22563913 |
gaaaaagctaaatatcactctcttcaacataaacataaaaaaatataaataacactgttccttcacttaaaatcaaaattaaacactaaatcgtggtttc |
22564012 |
T |
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| Q |
301 |
attcaaattaaaatcccgaaaatgtttgacttgaattcaagatctgattccccgtccgattcatcaccttcatc |
374 |
Q |
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| T |
22564013 |
attcaaattaaaatcccgaaaatgtttgactcgaattcaagatctgattccccgtccgattcatcaccttcatc |
22564086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 22563686 - 22563798
Alignment:
| Q |
7 |
caaataacctattttgttgcacataaaaatgaaattagaagattaagacagacccaaaaggtgaaaattaataaacaaaatctaaaatttaatttaaata |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22563686 |
caaataacctattttgttgcacataaaaatgaaattagaagattaagacagacccaaaaggtgaaaattaataaacaaaatctaaaatttaatttaaata |
22563785 |
T |
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| Q |
107 |
ttgtaagtagaat |
119 |
Q |
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| T |
22563786 |
ttgtaagtagaat |
22563798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 21898926 - 21898975
Alignment:
| Q |
38 |
aaattagaagattaagacagacccaaaaggtgaaaattaataaacaaaat |
87 |
Q |
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||||||||||||||||||| || ||||||||| ||||| |||| |||||| |
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| T |
21898926 |
aaattagaagattaagacaaacacaaaaggtggaaattgataaccaaaat |
21898975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 22573409 - 22573465
Alignment:
| Q |
159 |
tcaataagacaatttacatggcaacttcaggtttatccatcagaaaaagctaaatat |
215 |
Q |
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||||||| |||| ||||||| |||||||| | ||||||||||||||||| |||||| |
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| T |
22573409 |
tcaataaaacaaattacatgacaacttcaactctatccatcagaaaaagcaaaatat |
22573465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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