View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19505_low_12 (Length: 367)
Name: NF19505_low_12
Description: NF19505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19505_low_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 55303902 - 55303536
Alignment:
| Q |
1 |
aatatgcaagatgttgatgcaaaagtgcaattactagatgacgagattataagtgattaggataacaacagaaatagaattgagtctgaaattgtatgat |
100 |
Q |
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| T |
55303902 |
aatacgcaagatgttgatgcaaaagtgcaattactagatgacgagattataagtgattaggataacaacagaaatagaattgagtctgaaattgtatgat |
55303803 |
T |
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| Q |
101 |
tagaggaaaggtaagtaatagcaaatgctgagtgacctgttgggttgatggtgatgagaggcggaccgtggtgcaatatgattggattggttgtagcctt |
200 |
Q |
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| T |
55303802 |
tagaggaaaggtaagtaatagcaaatgctgagtgacctgttgggttgatggtgatgagaggcggaccgtggtgcaatatgattggattggttgtagcctt |
55303703 |
T |
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| Q |
201 |
gattcatcagagcaacaaaagaacagcttattacaccctttatacttttctaccagccactttatatacaacaccgattctaacgatagcttctccgcct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55303702 |
gattcatcagagcaacaaaagaacagcttattacaccctttatacttttctaccagccactttatatacaacaccgattctaacgatagcttctccgcct |
55303603 |
T |
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| Q |
301 |
catacaaaattattgcnnnnnnngtttgtttgttgagatatataataaacagttaaacatattaatt |
367 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55303602 |
catacaaaattattgctttttttgtttgtttgttgagatatataataaacagttaaacatattaatt |
55303536 |
T |
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