View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19505_low_16 (Length: 317)
Name: NF19505_low_16
Description: NF19505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19505_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 5967653 - 5967945
Alignment:
| Q |
17 |
attagacgaccatgttaggaagatgactcaaacgcgggacggtaattgtatggatgaaagtttccatttcatcgtttgtaaactnnnnnnnntggtaaac |
116 |
Q |
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| T |
5967653 |
attagatgaccatgttaggaagatgactcaaatgcgggacggtaattgtatggatgaaagtttccatttcatcgtttgtaaactaaaaaaaatggtaaac |
5967752 |
T |
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| Q |
117 |
aagatcaataaacaactaggtggtacacatggttatttggaattgatgcttatttgatacacatgattatttgccaatactcacttttttcactcaagta |
216 |
Q |
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| T |
5967753 |
aagatcaataaacaactaggtggtacacatggttatttggaattgatgcttatttgatacacatgattatttgccaatactcacttttttcactcaagta |
5967852 |
T |
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| Q |
217 |
caaattggtctatctatgaaatcaagttttgttgcgatgttatttggtttgtgtccatgtaacacttctatgacaaatttagctgtattctct |
309 |
Q |
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| T |
5967853 |
caaattggtctatctatgaaatcaagttttgttgcgatgttatttggtttgtgtccatgtaacacttctatgacaaatttagctgtattctct |
5967945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 8716443 - 8716147
Alignment:
| Q |
17 |
attagacgaccatgttaggaagatgactcaaacgcgggacggtaattgtatggatgaaagtttccatttcatcgtttgtaaactnnnnnnnntggtaaac |
116 |
Q |
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| T |
8716443 |
attagacgacaatgttaggaagatgactcaaacgcgggacggtaattttatggatgaaagtttccatttcatagtttgtaaactaaaaaaaatggtaacc |
8716344 |
T |
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| Q |
117 |
aagatcaataaacaactaggtggtacacatggttatttggaattgatgcttatttgatacacatgattatttgccaatactcactt-ttttcactcaagt |
215 |
Q |
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| T |
8716343 |
aagatcaataaacaactaggtggtacacatggttatttggaattgatgcttatttgatacacatgattatttgccaatactcactttttttcactcaagt |
8716244 |
T |
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| Q |
216 |
acaaattggtctatctatgaaatcaagttttgttgcgatgttatttggtttgtgtccatgtaac---acttctatgacaaatttagctgtattctct |
309 |
Q |
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| T |
8716243 |
aaaaattggtctatctatgaaatcaagttttgttgcgaagttatttggtttgtgtccatgtaacactacttctatgacaaatttagctgtattctct |
8716147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 5983592 - 5983667
Alignment:
| Q |
21 |
gacgaccatgttaggaagatgactcaaacgcgggacggtaattgtatggatgaaagtttccatttcatcgtttgta |
96 |
Q |
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| T |
5983592 |
gacgacaatgttaggaagatgactcaaacgatggacggtaatggtatggatgaaagtttccatttcattgtttgta |
5983667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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