View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19505_low_17 (Length: 301)
Name: NF19505_low_17
Description: NF19505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19505_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 51487390 - 51487105
Alignment:
| Q |
1 |
catatgtttacactggatcattggtttctccaaacctgtaaattgaatacatccatcaatttcatgaaacacgcacaataaatgcaaattttaaatcgcg |
100 |
Q |
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| T |
51487390 |
catatgtttacactggatcattggtttctccaaacctgtaaattgaatacatccatcaatttcatgaaacacacacaataaatgcaaattttaaatcgcg |
51487291 |
T |
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| Q |
101 |
agcctagagaatcggacaaaagaatgtgtacatgagatataatctaccaacgcctttgagagcaaagcagtatatcaagaaacacaagtatatcaaattc |
200 |
Q |
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| T |
51487290 |
agcctagagaatcggacaaaagaatgtgtacatgagatataatctaccaatgcctttgagagcaaagcagtatatcaagaaacacaagtatatcaaattc |
51487191 |
T |
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| Q |
201 |
ataaccaaagggagaggaagtttgcaatcagtaacctttgttttctccaatttgttaaccacatcaaacatagcatatatagtcat |
286 |
Q |
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| T |
51487190 |
ataaccaaagggagaggaagtttgcaatcagtaacctttgttttctccaatttgttaaccacatcaagcatagcatatatagtcat |
51487105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 30199163 - 30199224
Alignment:
| Q |
7 |
tttacactggatcattggtttctccaaacctgtaaattgaat-acatccatcaatttcatga |
67 |
Q |
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|||||| |||| | |||||||||||| ||||||||||||||| ||| |||||||||||||| |
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| T |
30199163 |
tttacattggaaccttggtttctccagacctgtaaattgaatgacagacatcaatttcatga |
30199224 |
T |
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