View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19505_low_2 (Length: 689)
Name: NF19505_low_2
Description: NF19505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19505_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 21 - 535
Target Start/End: Original strand, 48043227 - 48043734
Alignment:
| Q |
21 |
gaagaatattgtgaacctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttatcacaggctatcagattggattt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
48043227 |
gaagaatattgtgaacctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttattacaagctatcagattggattt |
48043326 |
T |
|
| Q |
121 |
aaagccagtcaaatatggaaaagaaaaactagtagtatgatacaccaatatcatcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatag |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48043327 |
aaagccagtcaaatatggaaaagaaaaactagtagtatgatacaccaatatcatcccttcaatgaccttgatatcagtctgcaatgtaacattcaaatag |
48043426 |
T |
|
| Q |
221 |
attcatatggcagaagttgagagcttcagttgtttgctttagaatgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgagat |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48043427 |
attcatatggcagaagttgagagcttcagttgtttgctttagaatgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgagat |
48043526 |
T |
|
| Q |
321 |
catgatgtaacaaacttccctcccattgattgatttcagtcccctgctcatgtgaaacaacatcatatgaatggaaagtacgagcacatcctgnnnnnnn |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
48043527 |
catgatgtaacaaacttccctcccattgattgatttcagtcccctgctcatgtgaaacaacatcatatgaatg--------gagcacatcctgaaaaaaa |
48043618 |
T |
|
| Q |
421 |
gcaaattttttgaaatcaaaggatcacacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttatt-acctagaa |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48043619 |
gcaaattttttgaaatcaaaggatcacacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattaacctagaa |
48043718 |
T |
|
| Q |
520 |
ccagcagtggaatccc |
535 |
Q |
| |
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|||||||||||||||| |
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| T |
48043719 |
ccagcagtggaatccc |
48043734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 163 - 413
Target Start/End: Original strand, 48056587 - 48056836
Alignment:
| Q |
163 |
caccaatatcatcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagagcttcagttgtttgctttag |
262 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||| |||| |
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| T |
48056587 |
caccaatatcatcccttcaatgaccttgatatcagtctgcaatgtaacattcaaatagaatcctagggcagaagttgagagcttcagttctttgcgttag |
48056686 |
T |
|
| Q |
263 |
aatgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgagatcatgatgtaacaaacttccctcccattgattgatttcagtcc |
362 |
Q |
| |
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||||||||||||||| |||||| |||||||| |||||| |||||||||||| ||||||||||||| |||||||||| ||| |||| ||||||||||||| |
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| T |
48056687 |
aatgttttacaaaccaacaaataactgagtcgatgttggtggagtttttacttgagatcatgatgcaacaaacttctctctcatttattgatttcagtct |
48056786 |
T |
|
| Q |
363 |
cctgctcatgtgaaacaacatcatatgaatggaaagtacgagcacatcctg |
413 |
Q |
| |
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|| | || |||||||||||||| ||||| ||||||||| ||||||||||| |
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| T |
48056787 |
ccagtgcacgtgaaacaacatca-atgaaaggaaagtacaagcacatcctg |
48056836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 309 - 530
Target Start/End: Original strand, 48051481 - 48051701
Alignment:
| Q |
309 |
tttacatgagatcatgatgtaacaaacttccctcccattgattgatttcagtcccctgctcatgtgaaacaacatcatatgaatggaaagtacgagcaca |
408 |
Q |
| |
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|||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||| || ||||||| |||| |
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| T |
48051481 |
tttacacgagatcatgatgtaacaaacttccttcccatatattgatttcagtcccctgcacatgtgaaacaacatcatatgaaaggcaagtacggacaca |
48051580 |
T |
|
| Q |
409 |
tcctgnnnnnnngcaaattttttgaaatcaaaggatcacacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatctt |
508 |
Q |
| |
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||||| || || ||| ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48051581 |
tcctgattaaaagctaaaattt-gaaatcataggatcacacactacttaaaccttttctgtcaggtcttgcttagacaaatccccaggtttatcaatctt |
48051679 |
T |
|
| Q |
509 |
attacctagaaccagcagtgga |
530 |
Q |
| |
|
|||| |||||||||||||||| |
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| T |
48051680 |
gttacttagaaccagcagtgga |
48051701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 164 - 344
Target Start/End: Original strand, 48051312 - 48051480
Alignment:
| Q |
164 |
accaatatcatcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagagcttcagttgtttgctttaga |
263 |
Q |
| |
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||||| |||||| |||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
48051312 |
accaacatcatctcttcaaagaccttgatatcagtctgcaatgtaacattcaaattgattcatatggcaagagttgagagcttcaattgtttgctttaga |
48051411 |
T |
|
| Q |
264 |
atgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgagatcatgatgtaacaaacttccctccc |
344 |
Q |
| |
|
||||||| || |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
48051412 |
atgtttt------------ataactgagtccatgttgttggagtttttacacgagatcatgatgtaacaaacttccctccc |
48051480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 172 - 366
Target Start/End: Original strand, 48037329 - 48037528
Alignment:
| Q |
172 |
catcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaag-ttgagagcttcagttgtttgctttagaatgtttt |
270 |
Q |
| |
|
||||||| | ||||| ||||||||||||||||||| |||||||||||||||||| | |||||||| |||||||||| |||| |||||||||||||| ||| |
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| T |
48037329 |
catccctaccatgacattgatatcagtctgcaatgcaacattcaaatagattcacagggcagaagtttgagagcttaagttctttgctttagaatgcttt |
48037428 |
T |
|
| Q |
271 |
acaaaccgacaaattactgagtc----aatgttgttggagtttttacatgagatcatgatgtaacaaacttccctcccattgattgatttcagtcccctg |
366 |
Q |
| |
|
||||| | || ||| |||||||| ||||||| || ||||||||||||||||||||| | |||||||||| || ||||||| |||| |||||||||| |
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| T |
48037429 |
acaaatcaactaataactgagtcaattaatgttggtgaagtttttacatgagatcatgaagcaacaaacttctctttcattgatggattccagtcccctg |
48037528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 619 - 671
Target Start/End: Original strand, 48043874 - 48043926
Alignment:
| Q |
619 |
aagtcatggagttcacttcttgaagcaggtaaattctcataagcggctgcatc |
671 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48043874 |
aagtcatggagttcacttcttgaagcaggtaaattctcataagcggctgcatc |
48043926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 185 - 319
Target Start/End: Original strand, 48045200 - 48045331
Alignment:
| Q |
185 |
accttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagagcttcagttgtttgctttag---aatgttttacaaaccgaca |
281 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||| ||||| ||||||| |||| |||||||||| ||||||||||||| | || |
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| T |
48045200 |
accttgatatcaatctgcaatgcaacattcaaatagattcatagggcaggagttgag------agttctttgctttagaaaaatgttttacaaagcaacg |
48045293 |
T |
|
| Q |
282 |
aattactgagtcaatgttgttggagtttttacatgaga |
319 |
Q |
| |
|
|| |||||| |||||||| || ||||||||||||||| |
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|
| T |
48045294 |
cataactgagccaatgttggtgtagtttttacatgaga |
48045331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 48051132 - 48051209
Alignment:
| Q |
21 |
gaagaatattgtgaacctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttatcaca |
102 |
Q |
| |
|
||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
48051132 |
gaagaatgttgtgaacctgaatggta----aataagtataatactctctttgatacctttgttggtaaaccaagctatcaca |
48051209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 446 - 523
Target Start/End: Original strand, 48056891 - 48056968
Alignment:
| Q |
446 |
acacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattacctagaaccag |
523 |
Q |
| |
|
||||| |||||| ||||||| |||| |||||||||||||||| | ||||||||||||||||||||||| |||||||| |
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| T |
48056891 |
acacagtacttacatcttttctgtcgtgtcttgcttagacaaagcaccaggtttgtcaatcttattaccaagaaccag |
48056968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 467 - 534
Target Start/End: Original strand, 48045485 - 48045552
Alignment:
| Q |
467 |
tgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattacctagaaccagcagtggaatcc |
534 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||| |||||||||| |||||||| | |||||| |
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|
| T |
48045485 |
tgtcgggtcttgcttagacaaattgtcaggtttgtcaattttattacctaaaaccagcaattgaatcc |
48045552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 579 - 617
Target Start/End: Original strand, 48043794 - 48043832
Alignment:
| Q |
579 |
ggaattgaatctgagatcacccttatcactccattcttt |
617 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |
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| T |
48043794 |
ggaatcgaatctgagatcacccttatcactccattcttt |
48043832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 48056456 - 48056532
Alignment:
| Q |
21 |
gaagaatattgtgaacctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttatca |
100 |
Q |
| |
|
||||||||||||||| ||| |||||| ||| |||||| | |||||||||||||||||| ||||||||| |||||||| |
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| T |
48056456 |
gaagaatattgtgaatctgaatggtatataagtaagtaga---ctctctttgatacctttgatggtaaaccaagttatca |
48056532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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