View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19505_low_25 (Length: 244)
Name: NF19505_low_25
Description: NF19505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19505_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 656633 - 656406
Alignment:
| Q |
1 |
tgcattcatggattttctttcacacactccatttatactacagaaatgggttgtgtggacacttgagaaaatatgataggaaaactaactacttactaac |
100 |
Q |
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| T |
656633 |
tgcattcatggattttctttcacacactccatttatactacagaaatgggttgtgtggacacttgagaaaatatgataggaaaactaactacttactaac |
656534 |
T |
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| Q |
101 |
atgaaggctttatacaattacattatattcagtcgtggagtcccaacattgaaagaaaccaaaaaatggtgagtctcagtgttggcagaaaactaaaaat |
200 |
Q |
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| T |
656533 |
atgaaggctttatacaattacaccatattcagccgtggagtcccaacattgaaagaaaccaaaaaatggtgagtctcagtgttggcagaaaactaaaaat |
656434 |
T |
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| Q |
201 |
gatacaatgtcgacaacatacctattga |
228 |
Q |
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| T |
656433 |
gatacgatgtcgataacatacctattga |
656406 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 22381312 - 22381250
Alignment:
| Q |
161 |
aaaaaatggtgagtctcagtgttggcagaaaactaaaaatgatacaatgtcgacaacatacct |
223 |
Q |
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| T |
22381312 |
aaaaaatggtaagtattagtgttggcagaaaactaaaaacgatacgatatcggcaacatacct |
22381250 |
T |
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