View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19505_low_26 (Length: 239)
Name: NF19505_low_26
Description: NF19505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19505_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 51 - 231
Target Start/End: Complemental strand, 6348129 - 6347949
Alignment:
| Q |
51 |
tgataatattttaagaaaatataatcatatgtgttggtgtcgtcgtatatcaaacatcagacccattgatatgaagtgtctatctttagattgaatagta |
150 |
Q |
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| T |
6348129 |
tgataatattttaagaaaatgtaatcatatgtgtcggtgttgtcgcatgtcagacatcagacccattaatatgaagtgtcaatctttaaattgaatggta |
6348030 |
T |
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| Q |
151 |
tgtagcattgacgcatacatagacaacatatatgatattgacactaacacgtagacaattgaaatatttaaagaaaatgta |
231 |
Q |
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| T |
6348029 |
tgtagcattgacgcatacatagacaacatatatgatattgacaccgatacgtagacattggaaatatttcaagaaaatgta |
6347949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 47 - 233
Target Start/End: Complemental strand, 6325910 - 6325729
Alignment:
| Q |
47 |
acactgataatattttaagaaaatataatcatatgtgttggtgtcgtcgtatatcaaacatcagacccattgatatgaagtgtctatctttagattgaat |
146 |
Q |
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| T |
6325910 |
acactgataatattttaagaaaatgtaatcatatgtgttggtgtcgtcgcatgccggacatc-----cattaatatgaagtgtcaatctttagattgaat |
6325816 |
T |
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| Q |
147 |
agtatgtagcattgacgcatacatagacaacatatatgatattgacactaacacgtagacaattgaaatatttaaagaaaatgtaag |
233 |
Q |
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| T |
6325815 |
ggtatgtagcattgatacatacatagacaacatatatgatattgacactgacacgtagacattagaaatatttcaagaaaatataag |
6325729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 47 - 233
Target Start/End: Complemental strand, 6332866 - 6332685
Alignment:
| Q |
47 |
acactgataatattttaagaaaatataatcatatgtgttggtgtcgtcgtatatcaaacatcagacccattgatatgaagtgtctatctttagattgaat |
146 |
Q |
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| T |
6332866 |
acactgataatattttaagaaaatgtaatcatatgtgttggtgtcgtcgcatgccggacatc-----cattaatatgaagtgtcaatctttagattgaat |
6332772 |
T |
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| Q |
147 |
agtatgtagcattgacgcatacatagacaacatatatgatattgacactaacacgtagacaattgaaatatttaaagaaaatgtaag |
233 |
Q |
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| T |
6332771 |
ggtatgtagcattgatacatacatagacaacatatatgatattgacactgacacgtagacattagaaatatttcaagaaaatataag |
6332685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 6348201 - 6348153
Alignment:
| Q |
36 |
aaataacatttacactgataatattttaagaaaatataatcatatgtgt |
84 |
Q |
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| T |
6348201 |
aaataatatttacactgataatattttaagaaaatgtaatcatatgtgt |
6348153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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