View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19505_low_28 (Length: 237)
Name: NF19505_low_28
Description: NF19505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19505_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 3402978 - 3402758
Alignment:
| Q |
1 |
cctttttcgctctaagtagcactttcgtaatcgagtattgctgtttatagcgaacaacactatcgcgaattgatcacgaaattacaacaactgtaagatc |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3402978 |
cctttttcgctctaagtagcattttcgtaatcgagtattgctgtttatagcgaacaacactatcgcgaattgatcacgaaattacaacaactgtcagatc |
3402879 |
T |
|
| Q |
101 |
ttttctttggtggaataaatacgggcttaagttagttgcatagccatgatatcatcgtgaacttctttttcgctctaagtagcatttttgttctcttata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3402878 |
ttttctttggtggaataaatacgggcttaagttagttgcatagccatgatatcatcgtgaacttctttttcgctctaagtagcatttttgttctcttata |
3402779 |
T |
|
| Q |
201 |
tgattttgctgttcacatagc |
221 |
Q |
| |
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|||||||| |||||||||||| |
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| T |
3402778 |
tgattttgttgttcacatagc |
3402758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 20829806 - 20829917
Alignment:
| Q |
5 |
tttcgctctaagtagcactttcgtaatcgagtattgctgtttatagcgaacaacactatcgcgaattgatcacgaaattacaacaactgtaagatctttt |
104 |
Q |
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|||||||||||| |||| ||| || || | | ||| ||||||||| ||||||||||||| | |||||||| |||||||||| |||| | | ||||||| |
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| T |
20829806 |
tttcgctctaagcagcatttttgttgtctaatgttgttgtttatagggaacaacactatcacaaattgatcgcgaaattacagcaaccatcatatctttt |
20829905 |
T |
|
| Q |
105 |
ctttggtggaat |
116 |
Q |
| |
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||||||| |||| |
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| T |
20829906 |
ctttggttgaat |
20829917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 20829971 - 20830015
Alignment:
| Q |
145 |
catgatatcatcgtgaacttctttttcgctctaagtagcattttt |
189 |
Q |
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||||||||||| |||| |||||||||| ||||||||||||||||| |
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| T |
20829971 |
catgatatcattgtgagcttctttttcactctaagtagcattttt |
20830015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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