View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19505_low_29 (Length: 236)
Name: NF19505_low_29
Description: NF19505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19505_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 53 - 224
Target Start/End: Original strand, 6326061 - 6326232
Alignment:
| Q |
53 |
atctaattattacctgattcaatgttgtgtgtagcaagaacaacggatccttttccattagcaaacttctcaagcaaataagatgaacaatcattgaagc |
152 |
Q |
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| T |
6326061 |
atctaattagtacctgattcaatgttgtgtgtagcaagaacaacagatccttttccattagcaaacttctcaagcaaataagatgaacaatcattgaagc |
6326160 |
T |
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| Q |
153 |
aattatgtgtatcttcaatagtatcatgaattggtgatttagacccaaaagactcagccaatgtactttctg |
224 |
Q |
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| T |
6326161 |
aattatgtgtatcttcaatagtatcatgaattggtgacttagacccaaaagattcagccaatgtactttctg |
6326232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 53 - 224
Target Start/End: Original strand, 6333017 - 6333188
Alignment:
| Q |
53 |
atctaattattacctgattcaatgttgtgtgtagcaagaacaacggatccttttccattagcaaacttctcaagcaaataagatgaacaatcattgaagc |
152 |
Q |
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| T |
6333017 |
atctaattagtacctgattcaatgttgtgtgtagcaagaacaacagatccttttccattagcaaacttctcaagcaaataagatgaacaatcattgaagc |
6333116 |
T |
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| Q |
153 |
aattatgtgtatcttcaatagtatcatgaattggtgatttagacccaaaagactcagccaatgtactttctg |
224 |
Q |
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| T |
6333117 |
aattatgtgtatcttcaatagtatcatgaattggtgacttagacccaaaagattcagccaatgtactttctg |
6333188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 51 - 224
Target Start/End: Original strand, 6348295 - 6348468
Alignment:
| Q |
51 |
atatctaattattacctgattcaatgttgtgtgtagcaagaacaacggatccttttccattagcaaacttctcaagcaaataagatgaacaatcattgaa |
150 |
Q |
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| T |
6348295 |
atatctaataagtacctgattcaatgttgtgtgtagcaagaacaacagatccttttccattagcaaacttctcaagcaaataagatgaacaatcattgaa |
6348394 |
T |
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| Q |
151 |
gcaattatgtgtatcttcaatagtatcatgaattggtgatttagacccaaaagactcagccaatgtactttctg |
224 |
Q |
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| T |
6348395 |
gcaattatgtgtatctttaatagtatcatgaattggtgacttagacccaaaagattcagccaatgtactttctg |
6348468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 6490339 - 6490257
Alignment:
| Q |
107 |
ccattagcaaacttctcaagcaaataagatgaacaatcattgaagcaattatgtgtatcttcaatagtatcatgaattggtga |
189 |
Q |
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| T |
6490339 |
ccattagcaatcttctcaagcatgtaatctgaacaatcattgaaacacttatgtgtatccttaatagtgttatgaattggtga |
6490257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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