View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19505_low_3 (Length: 562)
Name: NF19505_low_3
Description: NF19505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19505_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 13 - 546
Target Start/End: Complemental strand, 8696514 - 8695981
Alignment:
| Q |
13 |
tgaaattgatgtgagtcaaattcgtgaaatccctttgagtaaaagaacaactgttcgaactttagctgttgccatgaatacaaatacaagtgcagtatat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8696514 |
tgaaattgatgtgagtcaaattcgtgaaatccctttgagtaaaagaacaactgttcgaactttagctgttgccatgaatacaaatacaagtgcattatat |
8696415 |
T |
|
| Q |
113 |
aggattatattatcaggtgcaatacaacgtcattcgagtgccataaagccacaactaaccgaggaaggtaaaagattgcggttggagttttgtttgtcga |
212 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8696414 |
aggcttatattatcaggtgcaatacaacgtcattcgagtgccataaagccacaactaacagaggaaggtaaaagattgcggttggagttttgtttgtcga |
8696315 |
T |
|
| Q |
213 |
tgcttgaaggtataccacatgatccaatgtttaaaagtatgtataatattattcacattgacgaaaaatggttctatatgacaaagaaatctgagagata |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
8696314 |
tgcttgaaggtataccacatgatccaatgtttaaaagtatgtataatattattcacattgacgaaaaatggttctatatgacgaagaaatctgagagata |
8696215 |
T |
|
| Q |
313 |
ctatttgctgccagacgaggataaaccacatcgtagttgtaaaagcaaaaattttgttccgaaagttatgtttttaactgttgtagctcgaccaagattt |
412 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8696214 |
ctatttgctgccagacgaggataaaccacatcgtagttgtaaaagcaaaaattttgttctgaaagttatgtttttaactgttgtagctcgaccaagattt |
8696115 |
T |
|
| Q |
413 |
gactcggnnnnnnntgtaaccttttcagggaaaattggaattttcccatttgttactcaagaaccggctaaaaggacaagtgttaacagagtggcgggaa |
512 |
Q |
| |
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|||| || |||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8696114 |
gacttggaaaaaaatgtaactttttcatggaaaattggaatttttccatttgttactcaagaaccggctaaaaggacaagtgttaacagagtggcgggaa |
8696015 |
T |
|
| Q |
513 |
caatggagacaaaagcaataacttcgataaatag |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
8696014 |
caatggagacaaaagcaataacttcgataaatag |
8695981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 531
Target Start/End: Complemental strand, 27026077 - 27026025
Alignment:
| Q |
479 |
gctaaaaggacaagtgttaacagagtggcgggaacaatggagacaaaagcaat |
531 |
Q |
| |
|
||||||||||| |||||||| |||||||| || ||||||||||| ||| |||| |
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|
| T |
27026077 |
gctaaaaggactagtgttaatagagtggctggtacaatggagactaaaccaat |
27026025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 64 - 546
Target Start/End: Complemental strand, 34224252 - 34223770
Alignment:
| Q |
64 |
tgttcgaactttagctgttgccatgaatacaaatacaagtgcagtatataggattatattatcaggtgcaatacaacgtcattcgagtgccataaagcca |
163 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
34224252 |
tgttcgaactttagttgttgccatgaatacaaatacaagtgcagtatataggcttatattataaggtgcaatacaacgtcattcgagtgccataaagcca |
34224153 |
T |
|
| Q |
164 |
caactaaccgaggaaggtaaaagattgcggttggagttttgtttgtcgatgcttgaaggtataccacatgatccaatgtttaaaagtatgtataatatta |
263 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34224152 |
caactaacagaggaaggtaaaagattgcggttggagttttgtttgtcgatgcttgaaggtataccacatgatccaatgtttaaaagtatgtataatatta |
34224053 |
T |
|
| Q |
264 |
ttcacattgacgaaaaatggttctatatgacaaagaaatctgagagatactatttgctgccagacgaggataaaccacatcgtagttgtaaaagcaaaaa |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34224052 |
ttcacattgacgaaaaatggttctatatgacgaagaaatctgagagatactatttgctgccagacgaggataaaccacatcgtagttgtaaaagcaaaaa |
34223953 |
T |
|
| Q |
364 |
ttttgttccgaaagttatgtttttaactgttgtagctcgaccaagatttgactcggnnnnnnntgtaaccttttcagggaaaattggaattttcccattt |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
34223952 |
ttttgttccgaaagttatgtttttaactgttgtagctcgaccaagatttgactcggaaaaaaatgtaaccttttcagggaaaattggaattttcccattt |
34223853 |
T |
|
| Q |
464 |
gttactcaagaaccggctaaaaggacaagtgttaacagagtggcgggaacaatggagacaaaagcaataacttcgataaatag |
546 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34223852 |
gttactcaagaaccggctaaaaggacaagtgttaacagagtggcgggaacaatggagacaaaagcaataacttcgataaatag |
34223770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 531
Target Start/End: Original strand, 10113928 - 10113980
Alignment:
| Q |
479 |
gctaaaaggacaagtgttaacagagtggcgggaacaatggagacaaaagcaat |
531 |
Q |
| |
|
||||||||||| |||||||| |||||||| || ||||||||||| ||| |||| |
|
|
| T |
10113928 |
gctaaaaggactagtgttaatagagtggctggtacaatggagactaaaccaat |
10113980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 40287479 - 40287412
Alignment:
| Q |
224 |
ataccacatgatccaatgtttaaaagtatgtataatattattcacattgacgaaaaatggttctatat |
291 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
40287479 |
ataccacatgatccagtgtttaagcctatgtataatgttgttcacattgatgaaaaatggttctatat |
40287412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 16444111 - 16444047
Alignment:
| Q |
224 |
ataccacatgatccaatgtttaaaagtatgtataatattattcacattgacgaaaaatggttcta |
288 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||| || ||||||| || |||||||||||||| |
|
|
| T |
16444111 |
ataccacatgatccagtgtttaaacctatgtataatgttgttcacatagatgaaaaatggttcta |
16444047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 7304074 - 7304138
Alignment:
| Q |
224 |
ataccacatgatccaatgtttaaaagtatgtataatattattcacattgacgaaaaatggttcta |
288 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||| || ||||||| || |||||||| ||||| |
|
|
| T |
7304074 |
ataccacatgatccagtgtttaaacctatgtataatgttgttcacatagatgaaaaatgattcta |
7304138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 6124252 - 6124316
Alignment:
| Q |
224 |
ataccacatgatccaatgtttaaaagtatgtataatattattcacattgacgaaaaatggttcta |
288 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||| || ||||||| || |||||||||||||| |
|
|
| T |
6124252 |
ataccacatgatccagtgtttaaacctatgtataatgttgttcacatagatgaaaaatggttcta |
6124316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 24742042 - 24742109
Alignment:
| Q |
224 |
ataccacatgatccaatgtttaaaagtatgtataatattattcacattgacgaaaaatggttctatat |
291 |
Q |
| |
|
||||||||||||| | ||||||| |||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
24742042 |
ataccacatgatcaagtgtttaagcctatgtataatgttgttcacattgatgaaaaatggttctatat |
24742109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 4202776 - 4202840
Alignment:
| Q |
224 |
ataccacatgatccaatgtttaaaagtatgtataatattattcacattgacgaaaaatggttcta |
288 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||| || || ||||||| |||||||||||||| |
|
|
| T |
4202776 |
ataccacatgatccagtgtttaagcatatgtataatgttgtttacattgatgaaaaatggttcta |
4202840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 10368896 - 10368832
Alignment:
| Q |
224 |
ataccacatgatccaatgtttaaaagtatgtataatattattcacattgacgaaaaatggttcta |
288 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||| || ||||| | || |||||||||||||| |
|
|
| T |
10368896 |
ataccacatgatccagtgtttaagcctatgtataatgttgttcacgtagatgaaaaatggttcta |
10368832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 531
Target Start/End: Complemental strand, 33021850 - 33021798
Alignment:
| Q |
479 |
gctaaaaggacaagtgttaacagagtggcgggaacaatggagacaaaagcaat |
531 |
Q |
| |
|
||||||||||| |||||||| |||||||| || ||||||||||| ||| |||| |
|
|
| T |
33021850 |
gctaaaaggactagtgttaatagagtggctggtacaatggagactaaaccaat |
33021798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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