View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19505_low_33 (Length: 224)
Name: NF19505_low_33
Description: NF19505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19505_low_33 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 5 - 208
Target Start/End: Original strand, 28975703 - 28975906
Alignment:
| Q |
5 |
aataagctgagtttctctcttcatgacttaccttctccccctcctctcctctcgtctgtctgttcaccatgttcctttctctcccccactcaaaccggcc |
104 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28975703 |
aataagctgagtttctctcttcacgacttaccttctccccctcctctcctctcctgtgtctgttcaccatgttcctttctctcccccactcaaactggcc |
28975802 |
T |
|
| Q |
105 |
accaacaaaagctttgcacggcggtggagtacgagttttcacggcgaaggtctcgtgtccttcgtctgtccagatccttctgctgagaaagaaattatgc |
204 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28975803 |
accaacaaaagcttcgcacggcggtggagtacgagttttcacggcgaaggtctcgtgtccttcgtctgtccagatccttctgctgagaaacaaattatgc |
28975902 |
T |
|
| Q |
205 |
tatg |
208 |
Q |
| |
|
|||| |
|
|
| T |
28975903 |
tatg |
28975906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 21274660 - 21274609
Alignment:
| Q |
5 |
aataagctgagtttctctcttcatgacttaccttctccccctcctctcctct |
56 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
21274660 |
aataagttgagtttctctctccatgacttaccttctccccctcatctcctct |
21274609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 26068171 - 26068120
Alignment:
| Q |
5 |
aataagctgagtttctctcttcatgacttaccttctccccctcctctcctct |
56 |
Q |
| |
|
|||||| ||||||||||||| || ||||||||||||||||||| |||||||| |
|
|
| T |
26068171 |
aataagttgagtttctctctccacgacttaccttctccccctcatctcctct |
26068120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 6378661 - 6378458
Alignment:
| Q |
5 |
aataagctgagtttctctcttcatgacttaccttctccccctcctctcctctcgtctgtctgttcaccatgttcctttctctcccccactcaaaccggcc |
104 |
Q |
| |
|
|||||||||||||||||||| || | ||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6378661 |
aataagctgagtttctctctccacgccttaccttctccccctcctatcctctcctctatctgttcaccatgttcctttctctcccccactcaaaccggcc |
6378562 |
T |
|
| Q |
105 |
accaacaaaagctttgcacggcggtggagtacgagttttcacggcgaaggtctcgtgtccttcgtctgtccagatccttctgctgagaaagaaattatgc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6378561 |
gccaacaaaagctttgcacggcggtggagtacgagttttcatggcgacggtctcgtgtctttcgtctgtccagatccttctgctgagaaataaattatgt |
6378462 |
T |
|
| Q |
205 |
tatg |
208 |
Q |
| |
|
|||| |
|
|
| T |
6378461 |
tatg |
6378458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 48817671 - 48817722
Alignment:
| Q |
5 |
aataagctgagtttctctcttcatgacttaccttctccccctcctctcctct |
56 |
Q |
| |
|
|||||| ||||||||||||| || ||||||||||||||||||| |||||||| |
|
|
| T |
48817671 |
aataagttgagtttctctctccacgacttaccttctccccctcatctcctct |
48817722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 37992113 - 37992153
Alignment:
| Q |
16 |
tttctctcttcatgacttaccttctccccctcctctcctct |
56 |
Q |
| |
|
||||||||| || | |||||||||||||||||||||||||| |
|
|
| T |
37992113 |
tttctctctccacgccttaccttctccccctcctctcctct |
37992153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University