View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19505_low_36 (Length: 217)

Name: NF19505_low_36
Description: NF19505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19505_low_36
NF19505_low_36
[»] chr5 (5 HSPs)
chr5 (1-132)||(38269505-38269636)
chr5 (174-216)||(1280480-1280522)
chr5 (167-217)||(38269421-38269471)
chr5 (174-217)||(22712929-22712972)
chr5 (169-217)||(192055-192103)
[»] chr7 (4 HSPs)
chr7 (174-217)||(14088850-14088893)
chr7 (174-217)||(14398868-14398911)
chr7 (176-216)||(25024627-25024667)
chr7 (177-217)||(26493744-26493784)
[»] chr2 (3 HSPs)
chr2 (170-217)||(45121330-45121377)
chr2 (174-217)||(33453218-33453261)
chr2 (31-132)||(45121194-45121297)
[»] chr3 (2 HSPs)
chr3 (74-132)||(38282412-38282470)
chr3 (178-217)||(43137232-43137271)
[»] chr6 (1 HSPs)
chr6 (177-217)||(11971064-11971104)
[»] chr8 (1 HSPs)
chr8 (174-217)||(13152424-13152467)
[»] chr4 (1 HSPs)
chr4 (174-217)||(31944718-31944761)
[»] chr1 (3 HSPs)
chr1 (174-217)||(25017488-25017531)
chr1 (174-217)||(40864749-40864792)
chr1 (167-217)||(28463190-28463240)
[»] scaffold0019 (1 HSPs)
scaffold0019 (177-217)||(134884-134924)


Alignment Details
Target: chr5 (Bit Score: 120; Significance: 1e-61; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 38269636 - 38269505
Alignment:
Q  1 tattatgcgcacgaaatagaccctttgtattaaaccattggcggtttcaccgtcaggcgactccgggcacttccgggctcaatcaacattttctttatac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||    
T  38269636 tattatgcgcacgaaatagaccctttgtattaaaccattggcggtttcaccgcccggcgactccgggcacttccgggctcaatcaacactttctttatac 38269537  T
Q  101 atggtacaacccaatagttcgttaacccactt 132  Q
    ||||||||||||||||||||||||||||||||    
T  38269536 atggtacaacccaatagttcgttaacccactt 38269505  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 1280480 - 1280522
Alignment:
Q  174 cgcaaagaggtgtcagaaaaggcatttacctcctaattttatt 216  Q
    ||||||||||| || ||||||||||||||||||||||||||||    
T  1280480 cgcaaagaggtctcggaaaaggcatttacctcctaattttatt 1280522  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 38269471 - 38269421
Alignment:
Q  167 tttcacacgcaaagaggtgtcagaaaaggcatttacctcctaattttattt 217  Q
    ||||||||  |||||||||| ||||||| ||||||||||||||||||||||    
T  38269471 tttcacacagaaagaggtgttagaaaagacatttacctcctaattttattt 38269421  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 22712972 - 22712929
Alignment:
Q  174 cgcaaagaggtgtcagaaaaggcatttacctcctaattttattt 217  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  22712972 cgcaaagaggtctcagaaagagcatttacctcctaattttattt 22712929  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 192055 - 192103
Alignment:
Q  169 tcacacgcaaagaggtgtcagaaaaggcatttacctcctaattttattt 217  Q
    |||||||||||||||| || ||||||  |||||||| ||||||||||||    
T  192055 tcacacgcaaagaggtttcggaaaagatatttaccttctaattttattt 192103  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 14088850 - 14088893
Alignment:
Q  174 cgcaaagaggtgtcagaaaaggcatttacctcctaattttattt 217  Q
    ||||||||||| || |||||||||||||||||||||||||||||    
T  14088850 cgcaaagaggtctcggaaaaggcatttacctcctaattttattt 14088893  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 14398868 - 14398911
Alignment:
Q  174 cgcaaagaggtgtcagaaaaggcatttacctcctaattttattt 217  Q
    ||||||||||| || |||||||||||||||||||||||||||||    
T  14398868 cgcaaagaggtctcggaaaaggcatttacctcctaattttattt 14398911  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 25024627 - 25024667
Alignment:
Q  176 caaagaggtgtcagaaaaggcatttacctcctaattttatt 216  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  25024627 caaagaggtctcagaaagggcatttacctcctaattttatt 25024667  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 26493784 - 26493744
Alignment:
Q  177 aaagaggtgtcagaaaaggcatttacctcctaattttattt 217  Q
    |||||||| || |||| ||||||||||||||||||||||||    
T  26493784 aaagaggtctcggaaagggcatttacctcctaattttattt 26493744  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 45121330 - 45121377
Alignment:
Q  170 cacacgcaaagaggtgtcagaaaaggcatttacctcctaattttattt 217  Q
    ||||||||||||||| || |||||| ||||||||||||||||||||||    
T  45121330 cacacgcaaagaggtctcggaaaagacatttacctcctaattttattt 45121377  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 33453261 - 33453218
Alignment:
Q  174 cgcaaagaggtgtcagaaaaggcatttacctcctaattttattt 217  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  33453261 cgcaaagaggtatcagaaagagcatttacctcctaattttattt 33453218  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 45121194 - 45121297
Alignment:
Q  31 taaaccattggcggtttcaccgtcaggcgactccgggcactt--ccgggctcaatcaacattttctttatacatggtacaacccaatagttcgttaaccc 128  Q
    |||||||| |||||||||| |||| |||||| | ||||| ||  || ||||| ||||  | |||||||||| |||  ||||| ||||||||| |||||||    
T  45121194 taaaccatgggcggtttcatcgtccggcgaccctgggcatttgcccaggctcgatcagtactttctttatatatgacacaactcaatagttcattaaccc 45121293  T
Q  129 actt 132  Q
    ||||    
T  45121294 actt 45121297  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 38282412 - 38282470
Alignment:
Q  74 cgggctcaatcaacattttctttatacatggtacaacccaatagttcgttaacccactt 132  Q
    ||||||||||||||| |||||||||| ||||||||||||||||   | |||||||||||    
T  38282412 cgggctcaatcaacactttctttatatatggtacaacccaataacacattaacccactt 38282470  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 43137232 - 43137271
Alignment:
Q  178 aagaggtgtcagaaaaggcatttacctcctaattttattt 217  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  43137232 aagaggtctcagaaaaggtatttacctcctaattttattt 43137271  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 11971064 - 11971104
Alignment:
Q  177 aaagaggtgtcagaaaaggcatttacctcctaattttattt 217  Q
    |||||||| ||||||| ||||||||||||||||||||||||    
T  11971064 aaagaggtctcagaaagggcatttacctcctaattttattt 11971104  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 13152467 - 13152424
Alignment:
Q  174 cgcaaagaggtgtcagaaaaggcatttacctcctaattttattt 217  Q
    ||||||||||| || |||| ||||||||||||||||||||||||    
T  13152467 cgcaaagaggtctcggaaagggcatttacctcctaattttattt 13152424  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 31944718 - 31944761
Alignment:
Q  174 cgcaaagaggtgtcagaaaaggcatttacctcctaattttattt 217  Q
    ||||||||||| || |||| ||||||||||||||||||||||||    
T  31944718 cgcaaagaggtctcggaaagggcatttacctcctaattttattt 31944761  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 25017488 - 25017531
Alignment:
Q  174 cgcaaagaggtgtcagaaaaggcatttacctcctaattttattt 217  Q
    ||||||||||| ||||||| ||||| ||||||||||||||||||    
T  25017488 cgcaaagaggtctcagaaagggcatatacctcctaattttattt 25017531  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 40864792 - 40864749
Alignment:
Q  174 cgcaaagaggtgtcagaaaaggcatttacctcctaattttattt 217  Q
    ||||||||||| | ||||| ||||||||||||||||||||||||    
T  40864792 cgcaaagaggttttagaaagggcatttacctcctaattttattt 40864749  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 28463190 - 28463240
Alignment:
Q  167 tttcacacgcaaagaggtgtcagaaaaggcatttacctcctaattttattt 217  Q
    |||||||||||||||||| |  |||| |||||| |||||||||||||||||    
T  28463190 tttcacacgcaaagaggtcttggaaagggcattcacctcctaattttattt 28463240  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 134924 - 134884
Alignment:
Q  177 aaagaggtgtcagaaaaggcatttacctcctaattttattt 217  Q
    |||||||| || |||| ||||||||||||||||||||||||    
T  134924 aaagaggtctcggaaagggcatttacctcctaattttattt 134884  T

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