View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19505_low_4 (Length: 525)

Name: NF19505_low_4
Description: NF19505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19505_low_4
NF19505_low_4
[»] chr5 (18 HSPs)
chr5 (15-522)||(40283118-40283625)
chr5 (315-520)||(40332959-40333164)
chr5 (276-520)||(40386237-40386481)
chr5 (315-522)||(40375990-40376197)
chr5 (18-185)||(40311103-40311270)
chr5 (15-185)||(40326383-40326553)
chr5 (90-192)||(40303490-40303592)
chr5 (341-479)||(40598559-40598697)
chr5 (15-176)||(40362323-40362484)
chr5 (15-184)||(40409057-40409226)
chr5 (367-479)||(40276849-40276961)
chr5 (85-193)||(40333946-40334054)
chr5 (88-185)||(40256990-40257087)
chr5 (83-184)||(40406348-40406449)
chr5 (199-248)||(40597781-40597830)
chr5 (85-193)||(40387224-40387332)
chr5 (86-194)||(40597647-40597755)
chr5 (83-176)||(40457394-40457487)


Alignment Details
Target: chr5 (Bit Score: 492; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 15 - 522
Target Start/End: Complemental strand, 40283625 - 40283118
Alignment:
Q  15 aattgaaatccttgatgcctcaattgctttgactagagatgatgaaatttcctccccgcccttcagttcctcatcatccatgaaggtcttgaacccctcc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40283625 aattgaaatccttgatgcctcaattgctttgactagagatgatgaaatttcctccccgcctttcagttcctcatcatccatgaaggtcttgaacccctcc 40283526  T
Q  115 cggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaactgaggaaaatctgccatttaccaagtgatactttccatt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  40283525 cggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaactgaggaaaatctgccatttagcaagtgatgctttccatt 40283426  T
Q  215 cctcaattggtttacttccgaaggaagatcccacctttataattttttcaggtaacccttcacatttcccatttagtgcctttattttttcatataattc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40283425 cctcaattggtttacttccgaaggaagatcccacctttataattttttcaggtaacccttcacatttcccatttagtgcctttattttttcatataattc 40283326  T
Q  315 attaaattcattccatgatggcggttttgattgtattgtaagattctccatttcttgtatgatcatgtctgtttcttttagccactcaaacacaacatct 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40283325 attaaattcattccatgatggcggttttgattgtattgtaagattctccatttcttgtatgatcatgtctgtttcttttagccactcaaacacaacatct 40283226  T
Q  415 ctaaccttttcagttttacaatcaattgcttcaacttttgcacgcgcacgatcacgatttgaaatgagtttcttcttttgtctttcaactttcgtatagc 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40283225 ctaaccttttcagttttacaatcaattgcttcaacttttgcacgcgcacgatcacgatttgaaatgagtttcttcttttgtctttcaactttcatatagc 40283126  T
Q  515 ctttgcta 522  Q
    ||||||||    
T  40283125 ctttgcta 40283118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 315 - 520
Target Start/End: Complemental strand, 40333164 - 40332959
Alignment:
Q  315 attaaattcattccatgatggcggttttgattgtattgtaagattctccatttcttgtatgatcatgtctgtttcttttagccactcaaacacaacatct 414  Q
    |||||||||| |||||||||| ||||||||||||| | ||||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||||||||    
T  40333164 attaaattcaatccatgatggtggttttgattgtaatttaagattctccattttttgcatgattatgtctgcttcttttagccactcaaacacaacatct 40333065  T
Q  415 ctaaccttttcagttttacaatcaattgcttcaacttttgcacgcgcacgatcacgatttgaaatgagtttcttcttttgtctttcaactttcgtatagc 514  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  40333064 ctaaccttttcagttttacgatcaattgcttcaacttttgcacgcacacgatcacgatttgaaatgagtttcttcttttgtctttcaactttcatgtagc 40332965  T
Q  515 ctttgc 520  Q
    ||||||    
T  40332964 ctttgc 40332959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 276 - 520
Target Start/End: Complemental strand, 40386481 - 40386237
Alignment:
Q  276 acatttcccatttagtgcctttattttttcatataattcattaaattcattccatgatggcggttttgattgtattgtaagattctccatttcttgtatg 375  Q
    |||||||  |||||||||  | |||||||| |  |||| |||||||||| |||||||||| ||||||||||||| | ||||||||||||||| ||| |||    
T  40386481 acatttcttatttagtgctgtaattttttcctgcaatttattaaattcaatccatgatggtggttttgattgtaatttaagattctccattttttgcatg 40386382  T
Q  376 atcatgtctgtttcttttagccactcaaacacaacatctctaaccttttcagttttacaatcaattgcttcaacttttgcacgcgcacgatcacgatttg 475  Q
    |  || |||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||| |||||||||||||||    
T  40386381 actatttctgcttcttttagccactcaaacacaacatctctaaccttttcagttttactgtcaattgcttcaacttgtgcacgcacacgatcacgatttg 40386282  T
Q  476 aaatgagtttcttcttttgtctttcaactttcgtatagcctttgc 520  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  40386281 aaatgagtttcttcttttgtctttcaactttcatatagcctttgc 40386237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 315 - 522
Target Start/End: Complemental strand, 40376197 - 40375990
Alignment:
Q  315 attaaattcattccatgatggcggttttgattgtattgtaagattctccatttcttgtatgatcatgtctgtttcttttagccactcaaacacaacatct 414  Q
    |||||||||| |||||||||| ||||||||||||| || ||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||    
T  40376197 attaaattcaatccatgatggtggttttgattgtactgcaagattctccacttcttgtatgattatgtctgttttttttagccactcaaacacaacatct 40376098  T
Q  415 ctaaccttttcagttttacaatcaattgcttcaacttttgcacgcgcacgatcacgatttgaaatgagtttcttcttttgtctttcaactttcgtatagc 514  Q
    || |||||||||||||||  |||||||||||||||||||||| || ||||||| |||||||||  |||||| ||||||||||||||||||||| ||||||    
T  40376097 ctgaccttttcagttttaggatcaattgcttcaacttttgcatgcacacgatcgcgatttgaatagagtttgttcttttgtctttcaactttcatatagc 40375998  T
Q  515 ctttgcta 522  Q
    ||||||||    
T  40375997 ctttgcta 40375990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 40311270 - 40311103
Alignment:
Q  18 tgaaatccttgatgcctcaattgctttgactagagatgatgaaatttcctccccgcccttcagttcctcatcatccatgaaggtcttgaacccctcccgg 117  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||| || || |||||||   |||||||||||||||||||||||||||| ||||||    
T  40311270 tgaaatccttgatgcctcaattgctttgattagagaagatgaaatttcgtctccacccttcaacccctcatcatccatgaaggtcttgaacccttcccgg 40311171  T
Q  118 cacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaactgaggaaaat 185  Q
    || | |||||||||||||||||| |||||||| | |||||||||||  ||||||||||||| ||||||    
T  40311170 catagagcatcatagagaaaacccgtaaaagagtcacgagtatcttttcctctaaaactgatgaaaat 40311103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 40326553 - 40326383
Alignment:
Q  15 aattgaaatccttgatgcctcaattgctttgactagagatgatgaaatttcctccccgcccttcagttcctcatcatccatgaaggtcttgaacccctcc 114  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| | ||| ||||||| |||||||||||||||||||||||||||||||||     
T  40326553 aattgaaatccttgatgcctcaattgctttgattagagatgatgaaatttcattcccacccttcaattcctcatcatccatgaaggtcttgaacccctct 40326454  T
Q  115 cggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaactgaggaaaat 185  Q
    || |||| |  || ||||||||||||||| ||||| |  ||||||||||| ||| ||||||| || |||||    
T  40326453 cgacacagaatattatagagaaaacctgtgaaagagtagcgagtatcttctcctttaaaacttagaaaaat 40326383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 192
Target Start/End: Complemental strand, 40303592 - 40303490
Alignment:
Q  90 atccatgaaggtcttgaacccctcccggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaactgaggaaaatctgc 189  Q
    ||||||||| || ||||| || || || || | |||||||||||||||||| |||||||| |  ||||||||||| ||||||||||||| ||||||||||    
T  40303592 atccatgaatgttttgaatccttctcgacagagagcatcatagagaaaacccgtaaaagagtaccgagtatcttctcctctaaaactgatgaaaatctgc 40303493  T
Q  190 cat 192  Q
    |||    
T  40303492 cat 40303490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 341 - 479
Target Start/End: Original strand, 40598559 - 40598697
Alignment:
Q  341 ttgattgtattgtaagattctccatttcttgtatgatcatgtctgtttcttttagccactcaaacacaacatctctaaccttttcagttttacaatcaat 440  Q
    ||||||||| ||| ||||| || |  ||||| ||||  || ||||||||||||||||||||||||||| ||||  | ||||||||||||||   |||| |    
T  40598559 ttgattgtagtgtcagattttcaacctcttgcatgagtatatctgtttcttttagccactcaaacacagcatcgttgaccttttcagttttgtgatcagt 40598658  T
Q  441 tgcttcaacttttgcacgcgcacgatcacgatttgaaat 479  Q
    ||||||||||||| | ||| || |||| |||||||||||    
T  40598659 tgcttcaacttttacgcgcacaagatctcgatttgaaat 40598697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 40362484 - 40362323
Alignment:
Q  15 aattgaaatccttgatgcctcaattgctttgactagagatgatgaaatttcctccccgcccttcagttcctcatcatccatgaaggtcttgaacccctcc 114  Q
    |||||||| |||||||   ||||||||||||| ||||| |  ||||||||  |  || |||| || | ||||||||||||||||| ||||||| |||||     
T  40362484 aattgaaagccttgatttttcaattgctttgagtagagtttgtgaaatttggtttccaccctccaatccctcatcatccatgaagatcttgaatccctca 40362385  T
Q  115 cggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaact 176  Q
    || |||||||||| |||||| || || ||||| || |  |||||||||||||| | ||||||    
T  40362384 cgacacaaagcatgatagaggaatcccgtaaaggagtagcgagtatcttccccgcaaaaact 40362323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 40409226 - 40409057
Alignment:
Q  15 aattgaaatccttgatgcctcaattgctttgactagagatgatgaaatttcctccccgcccttcagttcctcatcatccatgaaggtcttgaacccctcc 114  Q
    |||||||| |||||||   ||||||||||||| || || |  ||||||||  |  || ||||||| | ||||||||||||||||| | ||||| |||||     
T  40409226 aattgaaagccttgatttttcaattgctttgagtaaagtttgtgaaatttggtttccacccttcaatccctcatcatccatgaagattttgaatccctca 40409127  T
Q  115 cggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaactgaggaaaa 184  Q
     | | |||| ||| ||||||||| ||||||||||| |  |||||||||||||| | ||||||||| ||||    
T  40409126 tgacgcaaatcatgatagagaaatcctgtaaaagagtagcgagtatcttccccgcaaaaactgagaaaaa 40409057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 479
Target Start/End: Complemental strand, 40276961 - 40276849
Alignment:
Q  367 tcttgtatgatcatgtctgtttcttttagccactcaaacacaacatctctaaccttttcagttttacaatcaattgcttcaacttttgcacgcgcacgat 466  Q
    ||||||||||  ||||||| ||||||||||||||  | |||| |||| || ||||| ||| || ||  ||||||||||| |  |||||||| | ||||||    
T  40276961 tcttgtatgagtatgtctgcttcttttagccacttgatcacatcatcgctcaccttatcaattctatgatcaattgctttatattttgcactcacacgat 40276862  T
Q  467 cacgatttgaaat 479  Q
    |||||||||||||    
T  40276861 cacgatttgaaat 40276849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 40334054 - 40333946
Alignment:
Q  85 tcatcatccatgaaggtcttgaacccctcccggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaactgaggaaaa 184  Q
    |||||||||||||| |||||||| ||| |  || | ||||| | | | |||  |||||||||||| |  |||||||||||||||||||||||||| || |    
T  40334054 tcatcatccatgaaagtcttgaatcccccttgggataaagcttgaaaaagactacctgtaaaagagtagcgagtatcttcccctctaaaactgagaaaca 40333955  T
Q  185 tctgccatt 193  Q
    |||||||||    
T  40333954 tctgccatt 40333946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 40256990 - 40257087
Alignment:
Q  88 tcatccatgaaggtcttgaacccctcccggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaactgaggaaaat 185  Q
    |||||||||||||| || || ||  || |||||||||||  ||||||| | ||||||||||| | |||||||||||| |||| ||| ||||| |||||    
T  40256990 tcatccatgaaggttttaaatccgacctggcacaaagcacgatagagagagcctgtaaaagaataacgagtatcttctcctcgaaagctgagaaaaat 40257087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 83 - 184
Target Start/End: Complemental strand, 40406449 - 40406348
Alignment:
Q  83 cctcatcatccatgaaggtcttgaacccctcccggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaactgaggaa 182  Q
    ||||||||||||||||| ||||||| |||||    | ||||||||  |||||||| |||||||| || |  |||||||||||||| | ||||||||| ||    
T  40406449 cctcatcatccatgaagatcttgaatccctcattactcaaagcatggtagagaaatcctgtaaaggagtagcgagtatcttccccgcaaaaactgagaaa 40406350  T
Q  183 aa 184  Q
    ||    
T  40406349 aa 40406348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 40597781 - 40597830
Alignment:
Q  199 agtgatactttccattcctcaattggtttacttccgaaggaagatcccac 248  Q
    |||||| |||||||||||||||||||||||| ||  ||||||||||||||    
T  40597781 agtgatgctttccattcctcaattggtttacctcttaaggaagatcccac 40597830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 40387332 - 40387224
Alignment:
Q  85 tcatcatccatgaaggtcttgaacccctcccggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaactgaggaaaa 184  Q
    |||||||||||||| |||||||| ||| |  || | ||||| | | | |||  |||||||||||| |  |||||||||||||||||||||||||| || |    
T  40387332 tcatcatccatgaaagtcttgaatcccccttgggataaagcttgaaaaagactacctgtaaaagagtagcgagtatcttcccctctaaaactgagaaaca 40387233  T
Q  185 tctgccatt 193  Q
    ||| |||||    
T  40387232 tctcccatt 40387224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 194
Target Start/End: Original strand, 40597647 - 40597755
Alignment:
Q  86 catcatccatgaaggtcttgaacccctcccggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaactgaggaaaat 185  Q
    |||||||||||||||||||||| ||| |  | || ||||| | ||| |||  |||||||||||| |  || |||||||| ||||||||||| | ||||||    
T  40597647 catcatccatgaaggtcttgaatcccccttgacataaagctttatacagattacctgtaaaagagtagcgtgtatcttctcctctaaaacttaagaaaat 40597746  T
Q  186 ctgccattt 194  Q
     ||||||||    
T  40597747 ttgccattt 40597755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 176
Target Start/End: Original strand, 40457394 - 40457487
Alignment:
Q  83 cctcatcatccatgaaggtcttgaacccctcccggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaact 176  Q
    ||||||||||||||||| ||||||| |||||  | | |||||||| |||||| || || ||||| || |  |||||||||||||| | ||||||    
T  40457394 cctcatcatccatgaagatcttgaatccctctagacgcaaagcatgatagaggaatcccgtaaaggagtagcgagtatcttccccgcaaaaact 40457487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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