View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19505_low_5 (Length: 497)

Name: NF19505_low_5
Description: NF19505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19505_low_5
NF19505_low_5
[»] chr2 (1 HSPs)
chr2 (10-493)||(14784941-14785427)
[»] chr7 (5 HSPs)
chr7 (17-493)||(48898563-48899049)
chr7 (272-387)||(34184079-34184194)
chr7 (272-387)||(34204668-34204783)
chr7 (149-211)||(34184264-34184326)
chr7 (149-211)||(34204853-34204915)
[»] chr5 (3 HSPs)
chr5 (10-370)||(31116304-31116673)
chr5 (145-493)||(38061701-38062059)
chr5 (433-486)||(31116209-31116262)
[»] chr3 (8 HSPs)
chr3 (444-487)||(25661726-25661769)
chr3 (444-487)||(25668131-25668174)
chr3 (444-487)||(25674536-25674579)
chr3 (444-487)||(25681210-25681253)
chr3 (444-487)||(25689514-25689557)
chr3 (272-372)||(25660770-25660870)
chr3 (272-372)||(25667175-25667275)
chr3 (272-372)||(25673580-25673680)


Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 10 - 493
Target Start/End: Original strand, 14784941 - 14785427
Alignment:
Q  10 tcatcagatgaatgacgcttttcttacgaagatgctttggaatgttataaccaaacttgatgacctttggtgcaagattctttatagtaagtgtgggagt 109  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14784941 tcatcagatgaatgatgcttttcttacgaagatgctttggaatgttataaccaaacttgatgacctttggtgcaaggttctttatagtaagtgtgggagt 14785040  T
Q  110 aataaagatcttagagtaaccatagattctcaattatatgattctc--ctttgtggaaagctttaacaggtatctgggatcaatttcagcaaaatattgt 207  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14785041 aataaagatcttagagaaaccatagattctcaatcatatgattctctcctttgtggaaagctttaacaggtatctgggatcaatttcagcaaaatattgt 14785140  T
Q  208 gtggtggctgagcaatggtaacaatattaatttttgggtggataaataaacttctagtggaacttccatcactaatcaaactagtattgacacaactcta 307  Q
    ||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  14785141 gtggtagctgagcaatgataacaatattaatttttggatggataaataaacttctactggaacttccatcactgatcaaactagtattgacacaactcta 14785240  T
Q  308 tatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttactatgtacatttgctttataggttcttgctat-ccta 406  Q
    |||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  14785241 tatgcgagggatgtggtaacctcctaagaagagtgggattataagttccttacttctaacttactatgtacatttgctttacaggttcttgctatcccta 14785340  T
Q  407 cacctatagaaacaaatgggtatgaaaatattggttagggaggaaccaacactagggatttcacaattcaacgtgcctatgcttctc 493  Q
    ||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||| |||||    
T  14785341 cacgtatagaaacaaatggatatgaaaatattggctagggaggaaccaacactagggatttcataattcaaagtgcctatgattctc 14785427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 493
Target Start/End: Complemental strand, 48899049 - 48898563
Alignment:
Q  17 atgaatgacgcttttcttacgaagatgctttggaatgttataaccaaacttgatgacctttggtgcaagattctttatagtaagtgtgggagtaataaag 116  Q
    ||||||||||||||||||| ||||||| |||||||| | || ||||| | | ||||||| ||||| ||| |||| |||||||||| |||||| |||||||    
T  48899049 atgaatgacgcttttcttatgaagatgttttggaatctaatcaccaagcctaatgacctatggtgtaaggttctctatagtaagtatgggaggaataaag 48898950  T
Q  117 atcttagagtaaccatagattctcaattatatgattctcctttgtggaaagctttaacaggtatctgggatcaatttcagcaaaatattgtgtggtggct 216  Q
    ||||||| ||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||||   ||||| |||||||| |||||||||||||||  | |    
T  48898949 atcttagggtagccatagattctaaatcatatgattctcctttatggaaagctttaacaggttattgggaacaatttcaacaaaatattgtgtggcagtt 48898850  T
Q  217 gagcaatggtaacaatattaatttttgggtggataaataaacttctagtggaact---------tccatcactaatcaaactagtattgacacaactcta 307  Q
    | || ||||||| ||||||||||||||| |||||||||   || |||||||||||         ||||| |||||||||| || |||||||||||||||     
T  48898849 gggcgatggtaataatattaatttttggatggataaatgggctcctagtggaacttctcttatgtccattactaatcaaaatattattgacacaactctc 48898750  T
Q  308 tatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttactatgtacatttgctttataggttcttgctat-ccta 406  Q
     |||||||||||||||||||| ||| || ||||||||||| ||| |||||||||||||||||||  | ||| ||||||||| ||||||||||||| |||     
T  48898749 catgtgagggacgtggtaaccccctaaggagagtgggattttaatttccttacttctaacttaccgtctacctttgctttacaggttcttgctatccctg 48898650  T
Q  407 cacctatagaaacaaatgggtatgaaaatattggttagggaggaaccaacactagggatttcacaattcaacgtgcctatgcttctc 493  Q
    |||||| ||| ||  ||||   ||| |||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| |||||    
T  48898649 cacctaaagacactgatggacttgacaatattggttggggaggaaccaacactagggatttcacaattcaaagtgtctatgattctc 48898563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 387
Target Start/End: Complemental strand, 34184194 - 34184079
Alignment:
Q  272 tccatcactaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttac 371  Q
    |||||||||||||||| |  | |||||||||| || ||||| | ||| ||||||||| | |||  ||| || |||||||| ||  |||||||||||||||    
T  34184194 tccatcactaatcaaaattatgttgacacaaccctctatgttaaggatgtggtaaccccttcaagagattgagattataattttattacttctaacttac 34184095  T
Q  372 tatgtacatttgcttt 387  Q
     || ||| ||||||||    
T  34184094 catttacctttgcttt 34184079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 387
Target Start/End: Complemental strand, 34204783 - 34204668
Alignment:
Q  272 tccatcactaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttac 371  Q
    |||||||||||||||| |  | |||||||||| || ||||| | ||| ||||||||| | |||  ||| || |||||||| ||  |||||||||||||||    
T  34204783 tccatcactaatcaaaattatgttgacacaaccctctatgttaaggatgtggtaaccccttcaagagattgagattataattttattacttctaacttac 34204684  T
Q  372 tatgtacatttgcttt 387  Q
     || ||| ||||||||    
T  34204683 catttacctttgcttt 34204668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 34184326 - 34184264
Alignment:
Q  149 gattctcctttgtggaaagctttaacaggtatctgggatcaatttcagcaaaatattgtgtgg 211  Q
    |||||||||||||||||||| |||  ||| || |||||  | |||||||||||||||||||||    
T  34184326 gattctcctttgtggaaagcattattaggcatttgggaaaattttcagcaaaatattgtgtgg 34184264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 34204915 - 34204853
Alignment:
Q  149 gattctcctttgtggaaagctttaacaggtatctgggatcaatttcagcaaaatattgtgtgg 211  Q
    |||||||||||||||||||| |||  ||| || |||||  | |||||||||||||||||||||    
T  34204915 gattctcctttgtggaaagcattattaggcatttgggaaaattttcagcaaaatattgtgtgg 34204853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 158; Significance: 7e-84; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 10 - 370
Target Start/End: Complemental strand, 31116673 - 31116304
Alignment:
Q  10 tcatcagatgaatgacgcttttcttacgaagatgctttggaatgttataaccaaacttgatgacctttggtgcaagattctttatagtaagtgtgggagt 109  Q
    |||||| ||||| |||| |||||||| ||||||||||| |||| | || ||||| ||||||||||| ||||| ||| ||||||||||||||| ||||||     
T  31116673 tcatcatatgaaagacgtttttcttatgaagatgcttttgaatctgatcaccaagcttgatgacctatggtgtaagcttctttatagtaagtatgggagg 31116574  T
Q  110 aataaagatcttagagtaaccatagattctcaattatatgattctcctttgtggaaagctttaacaggtatctgggatcaatttcagcaaaatattgtgt 209  Q
    |||||||||||||| ||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||| |||||| ||||| |||||||||||||||    
T  31116573 aataaagatcttagggtaaccatagattctaaatcatatgattcccctttgtggaaagctttaacaagtatttgggattaatttaagcaaaatattgtgt 31116474  T
Q  210 ggtggctgagcaatggtaacaatattaatttttgggtggataaataaacttctagtggaacttc---------catcactaatcaaactagtattgacac 300  Q
    ||  |||  ||||||||||||||||||| |||||| | |||||||   || | |||||||||||         ||||||||||||||| |||||| ||||    
T  31116473 ggcagcttggcaatggtaacaatattaacttttggatcgataaatgtgctcccagtggaacttctcttatgttcatcactaatcaaacaagtatttacac 31116374  T
Q  301 aactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaactta 370  Q
     |||||  ||||||||||||||||| ||| ||||| ||||||||| ||||| |||||||| |||||||||    
T  31116373 gactctccatgtgagggacgtggtagccttctcaggagagtgggactataatttccttacctctaactta 31116304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 145 - 493
Target Start/End: Original strand, 38061701 - 38062059
Alignment:
Q  145 atatgattctcctttgtggaaagctttaacaggtatctgggatcaatttcagcaaaatattgtgtggtggctgagcaatggtaacaatattaatttttgg 244  Q
    ||||||||||||||| ||||||||||||||| |||| ||||| | ||||||||||||||||||||||  | || || ||||||| ||||||||||||||     
T  38061701 atatgattctcctttatggaaagctttaacatgtatttgggaacgatttcagcaaaatattgtgtggcagttgggcgatggtaataatattaatttttga 38061800  T
Q  245 gtggataaataaacttctagtggaacttc---------catcactaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcag 335  Q
     |||||||||   || |||||||||||||         ||| ||||||||||||| |||||||| ||||||  ||||||| ||||||| |||| ||||||    
T  38061801 atggataaatgggctcctagtggaacttctcttatgtccattactaatcaaactattattgacataactctccatgtgagtgacgtggcaaccccctcag 38061900  T
Q  336 aagagtgggattataagttccttacttctaacttactatgtacatttgctttataggttcttgctat-cctacacctatagaaacaaatgggtatgaaaa 434  Q
     ||||||||||| ||| |||||||||||||||||||  | ||| ||||||||| |||||||| |||| ||| |||||| ||| ||  ||||   ||| ||    
T  38061901 gagagtgggattttaatttccttacttctaacttaccgtctacctttgctttacaggttctttctatccctgcacctaaagacactgatggacttgacaa 38062000  T
Q  435 tattggttagggaggaaccaacactagggatttcacaattcaacgtgcctatgcttctc 493  Q
    |||||||| ||||||||||||||||||||||||||||||| || ||| ||||| |||||    
T  38062001 tattggttggggaggaaccaacactagggatttcacaatttaaagtgtctatgattctc 38062059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 433 - 486
Target Start/End: Complemental strand, 31116262 - 31116209
Alignment:
Q  433 aatattggttagggaggaaccaacactagggatttcacaattcaacgtgcctat 486  Q
    ||||||||||  || |||||||||||||||||||||||||||||| ||||||||    
T  31116262 aatattggttgcggtggaaccaacactagggatttcacaattcaaagtgcctat 31116209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 487
Target Start/End: Original strand, 25661726 - 25661769
Alignment:
Q  444 gggaggaaccaacactagggatttcacaattcaacgtgcctatg 487  Q
    ||||||||||||||||||| | |||||||||||| |||||||||    
T  25661726 gggaggaaccaacactaggaaattcacaattcaaagtgcctatg 25661769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 487
Target Start/End: Original strand, 25668131 - 25668174
Alignment:
Q  444 gggaggaaccaacactagggatttcacaattcaacgtgcctatg 487  Q
    ||||||||||||||||||| | |||||||||||| |||||||||    
T  25668131 gggaggaaccaacactaggaaattcacaattcaaagtgcctatg 25668174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 487
Target Start/End: Original strand, 25674536 - 25674579
Alignment:
Q  444 gggaggaaccaacactagggatttcacaattcaacgtgcctatg 487  Q
    ||||||||||||||||||| | |||||||||||| |||||||||    
T  25674536 gggaggaaccaacactaggaaattcacaattcaaagtgcctatg 25674579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 487
Target Start/End: Original strand, 25681210 - 25681253
Alignment:
Q  444 gggaggaaccaacactagggatttcacaattcaacgtgcctatg 487  Q
    ||||||||||||||||||| | |||||||||||| |||||||||    
T  25681210 gggaggaaccaacactaggaaattcacaattcaaagtgcctatg 25681253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 487
Target Start/End: Original strand, 25689514 - 25689557
Alignment:
Q  444 gggaggaaccaacactagggatttcacaattcaacgtgcctatg 487  Q
    ||||||||||||||||||| | |||||||||||| |||||||||    
T  25689514 gggaggaaccaacactaggaaattcacaattcaaagtgcctatg 25689557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 372
Target Start/End: Original strand, 25660770 - 25660870
Alignment:
Q  272 tccatcactaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttac 371  Q
    |||||||||||||| || | ||||||||||||  | | ||| | ||| ||||||||| | |||| ||| ||||||||||| ||  |||||||||| ||||    
T  25660770 tccatcactaatcagacaaatattgacacaaccttttctgttaaggatgtggtaaccccttcaggagattgggattataattttattacttctaagttac 25660869  T
Q  372 t 372  Q
    |    
T  25660870 t 25660870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 372
Target Start/End: Original strand, 25667175 - 25667275
Alignment:
Q  272 tccatcactaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttac 371  Q
    |||||||||||||| || | ||||||||||||  | | ||| | ||| ||||||||| | |||| ||| ||||||||||| ||  |||||||||| ||||    
T  25667175 tccatcactaatcagacaaatattgacacaaccttttctgttaaggatgtggtaaccccttcaggagattgggattataattttattacttctaagttac 25667274  T
Q  372 t 372  Q
    |    
T  25667275 t 25667275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 372
Target Start/End: Original strand, 25673580 - 25673680
Alignment:
Q  272 tccatcactaatcaaactagtattgacacaactctatatgtgagggacgtggtaacctcctcagaagagtgggattataagttccttacttctaacttac 371  Q
    |||||||||||||| || | ||||||||||||  | | ||| | ||| ||||||||| | |||| ||| ||||||||||| ||  |||||||||| ||||    
T  25673580 tccatcactaatcagacaaatattgacacaaccttttctgttaaggatgtggtaaccccttcaggagattgggattataattttattacttctaagttac 25673679  T
Q  372 t 372  Q
    |    
T  25673680 t 25673680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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