View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19505_low_6 (Length: 428)
Name: NF19505_low_6
Description: NF19505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19505_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 34 - 265
Target Start/End: Original strand, 43977311 - 43977542
Alignment:
| Q |
34 |
gaaataacctgagtttattttgatctgtttactaaatttatttgagtaaggtacatgctaaattttttataacaatatgcaataacatagaatactggat |
133 |
Q |
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| T |
43977311 |
gaaataacctgagtttattttgatctgtttactaaatttatttgagtaaggtacatgctaaattttttataacaatatgcaataacatagaatactggat |
43977410 |
T |
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| Q |
134 |
ccgatattttctnnnnnnntatgtatctgttctcattctatatcaaggctctccaacgagctgtacaaattacaacctcgtgtttggatctcaacaaatt |
233 |
Q |
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| T |
43977411 |
ccgatattttctaaaaaaatatgtatctgttctcattctatatcaaggctctccaacgagctgtacaaattacaacctcgtgtttggatctcaacaaatt |
43977510 |
T |
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| Q |
234 |
gaattgaagtttcattcaaccatttgaacgat |
265 |
Q |
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| T |
43977511 |
gaattgaagtttcattcaaccatttgaacgat |
43977542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 313 - 410
Target Start/End: Original strand, 43977545 - 43977642
Alignment:
| Q |
313 |
gaaactataaacaaatagtaacaaagtatcatatatttcgttttcaatttttcttcatcaggagattgcgtttcgtcttcaacttggttcctattacc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43977545 |
gaaactataaacaaatagtaacaaagtatcatatatttcgttttcaatttttcttcatcaggagattgcgtttcgtcttcaacttggttcctattacc |
43977642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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