View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19505_low_8 (Length: 413)

Name: NF19505_low_8
Description: NF19505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19505_low_8
NF19505_low_8
[»] chr6 (3 HSPs)
chr6 (16-398)||(31262820-31263202)
chr6 (117-201)||(19845504-19845589)
chr6 (117-197)||(15342386-15342467)
[»] scaffold0186 (1 HSPs)
scaffold0186 (117-197)||(27627-27708)
[»] chr8 (4 HSPs)
chr8 (117-197)||(24921069-24921150)
chr8 (117-197)||(1083397-1083478)
chr8 (117-197)||(31390889-31390970)
chr8 (117-197)||(40502704-40502785)
[»] chr3 (3 HSPs)
chr3 (117-197)||(13819041-13819122)
chr3 (117-197)||(4267597-4267678)
chr3 (117-164)||(12211238-12211285)
[»] chr1 (4 HSPs)
chr1 (117-197)||(29496742-29496823)
chr1 (117-197)||(24707721-24707802)
chr1 (117-197)||(19148840-19148921)
chr1 (117-197)||(23675894-23675975)
[»] chr7 (1 HSPs)
chr7 (117-197)||(41549133-41549214)
[»] chr4 (1 HSPs)
chr4 (117-197)||(55042433-55042514)


Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 398
Target Start/End: Original strand, 31262820 - 31263202
Alignment:
Q  16 atgaagtggggttctgcgtttgccgtggatgaatggtgatacgagaaagaagatttaaattaatgaagtggcttgataaaattgtaatgtaaaannnnnn 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  31262820 atgaagtggggttctgcgtttgccgtggatgaatggtgatacgagaaagaagatttaaattaatgaagtggcttgataaaattgtaatgtaaaaaatttt 31262919  T
Q  116 natgctatttttaatttagtagaaccatgttgcacctataatattaatgaaacataatatgttgctagttactaactttgttcaacaatcgtatagtata 215  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31262920 tatgctatttttaatttagtagaaccatgttgcacctataatattaatgaaacataatatgttgctagttactaactttgttgaacaatcgtatagtata 31263019  T
Q  216 atatgtcagtatgcttgtgatgctctatattttcatttgcactaggtatgattattaagataaattttaacggtgtttgtatgacggatgttggataaat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31263020 atatgtcagtatgcttgtgatgctctatattttcatttgcactaggtatgattattaagataaattttaacggtgtttgtatgacggatgttggataaat 31263119  T
Q  316 gcacacaacattgaaatttgattatatcaccaagccatttgaaatgttattagagccgaaggatattttattatagttaaaac 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31263120 gcacacaacattgaaatttgattatatcaccaagccatttgaaatgttattagagccgaaggatattttattatagttaaaac 31263202  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 19845504 - 19845589
Alignment:
Q  117 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgttcaac 201  Q
    ||||||||||| ||||| ||| ||||||||||||||||||||||||| ||||||  |||||||| ||||||||||| |||||||||    
T  19845504 atgctattttttatttaataggaccatgttgcacctataatattaatggaaacaccatatgttgttagttactaacattgttcaac 19845589  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 15342467 - 15342386
Alignment:
Q  117 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 197  Q
    ||||||||||| | ||||||| ||||||| ||| || |||||||||| ||||||  |||||||| ||||||||||| |||||    
T  15342467 atgctattttttaattagtaggaccatgtcgcatctgtaatattaatggaaacaccatatgttgttagttactaacattgtt 15342386  T

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Target: scaffold0186 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 27627 - 27708
Alignment:
Q  117 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 197  Q
    ||||||||||| ||||||||| || |||| ||||||||||||||||| ||||||  |||||||| ||||||||||| |||||    
T  27627 atgctattttttatttagtaggacaatgtcgcacctataatattaatggaaacaccatatgttgttagttactaacattgtt 27708  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 24921150 - 24921069
Alignment:
Q  117 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 197  Q
    ||||||||||| ||||||||| || |||| ||||||||||||||||| ||||||  |||||||| ||||||||||| |||||    
T  24921150 atgctattttttatttagtaggacaatgtcgcacctataatattaatggaaacaccatatgttgttagttactaacattgtt 24921069  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 1083478 - 1083397
Alignment:
Q  117 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 197  Q
    ||||||||||| ||||||||| || |||| ||||||||||||||||| ||||||  |||||||| |||||| |||| |||||    
T  1083478 atgctattttttatttagtaggacaatgtcgcacctataatattaatggaaacaccatatgttgttagttattaacattgtt 1083397  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 31390889 - 31390970
Alignment:
Q  117 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 197  Q
    ||||||||||| ||||||||| || |||| ||||||||||||||||| ||||||  |||||||| |||||| |||| |||||    
T  31390889 atgctattttttatttagtaggacaatgtcgcacctataatattaatggaaacaccatatgttgttagttattaacattgtt 31390970  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 40502785 - 40502704
Alignment:
Q  117 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 197  Q
    ||||||||||| | ||||||| ||||||||||| || |||||||||| ||||||  |||||||| ||||||||||| |||||    
T  40502785 atgctattttttaattagtaggaccatgttgcatctgtaatattaatggaaacaccatatgttgttagttactaacattgtt 40502704  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 13819122 - 13819041
Alignment:
Q  117 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 197  Q
    ||||||||||| ||||||||| || |||| ||||||||||||||||| ||||||  |||||||| ||||||||||| |||||    
T  13819122 atgctattttttatttagtaggacaatgtcgcacctataatattaatggaaacaccatatgttgttagttactaacattgtt 13819041  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 4267597 - 4267678
Alignment:
Q  117 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 197  Q
    ||||||||||| ||||||||| || |||| ||||||||||||||||| ||||||   ||||||| |||||| |||| |||||    
T  4267597 atgctattttttatttagtaggacaatgtcgcacctataatattaatggaaacaccgtatgttgttagttattaacattgtt 4267678  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 12211238 - 12211285
Alignment:
Q  117 atgctatttttaatttagtagaaccatgttgcacctataatattaatg 164  Q
    ||||||||||| ||||||||| || |||| ||||||||||||||||||    
T  12211238 atgctattttttatttagtaggacaatgtcgcacctataatattaatg 12211285  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 29496742 - 29496823
Alignment:
Q  117 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 197  Q
    |||||| |||| ||||||||| ||||||||||||||||||||||| | ||||||  |||||||| ||||||||||| |||||    
T  29496742 atgctactttttatttagtaggaccatgttgcacctataatattattggaaacaccatatgttgttagttactaacattgtt 29496823  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 24707721 - 24707802
Alignment:
Q  117 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 197  Q
    ||||||||||| | ||||||| | ||||| ||||||||||||||||| ||||||  |||||||| ||||||||||| |||||    
T  24707721 atgctattttttaattagtaggatcatgtcgcacctataatattaatggaaacaccatatgttgttagttactaacattgtt 24707802  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 19148921 - 19148840
Alignment:
Q  117 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 197  Q
    ||||||||||| ||||||||| || |||| ||||||||||||||||| ||||||   ||||||| |||||| |||| |||||    
T  19148921 atgctattttttatttagtaggacaatgtcgcacctataatattaatggaaacaccgtatgttgttagttattaacattgtt 19148840  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 23675975 - 23675894
Alignment:
Q  117 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 197  Q
    ||||||||||| ||||||||| || |||| ||||||||||||||||| ||||||   ||||||| |||||| |||| |||||    
T  23675975 atgctattttttatttagtaggacaatgtcgcacctataatattaatggaaacaccgtatgttgttagttattaacattgtt 23675894  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 41549133 - 41549214
Alignment:
Q  117 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 197  Q
    ||||||||||| ||||||||| || |||| ||||||||||||||||| ||||||   ||||||| |||||| |||| |||||    
T  41549133 atgctattttttatttagtaggacaatgtcgcacctataatattaatggaaacaccgtatgttgttagttattaacattgtt 41549214  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 55042433 - 55042514
Alignment:
Q  117 atgctatttttaatttagtagaaccatgttgcacctataatattaat-gaaacataatatgttgctagttactaactttgtt 197  Q
    ||||||||||| ||||||||| || |||| ||||||||||||||||| ||||||   ||||||| |||||| |||| |||||    
T  55042433 atgctattttttatttagtaggacaatgtcgcacctataatattaatggaaacaccgtatgttgttagttattaacattgtt 55042514  T

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