View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19506_high_2 (Length: 474)
Name: NF19506_high_2
Description: NF19506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19506_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 18 - 464
Target Start/End: Complemental strand, 9486238 - 9485792
Alignment:
| Q |
18 |
aaatggagcataaggtaaatgggccataaactcgccattaacaatactataaaccatattagtatagtagaaaacacaacagattccaatgcaaaagata |
117 |
Q |
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| T |
9486238 |
aaatggagcataaggtaaatgggccataaactcgccattaacaatactataaaccatattagtatagtagaaaacacaacagattccaatgcaaaagata |
9486139 |
T |
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| Q |
118 |
aattatttcactactacttgtaacaatactataaaccataacaatacttgaaacaccgcctccaaatcaattaatttcactaccacttgatatagccttt |
217 |
Q |
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| T |
9486138 |
gattatttcactactacttgtaacaatactataaaccataacaatacttgaaacaccgcctccaaatcaattaatttcactaccacttgatatagccttt |
9486039 |
T |
|
| Q |
218 |
accaaatggcttctttgaaagtgtaagttgcacccctggatcatggtgggtacaagaagcatgtaataacaatgaattattcacacactgcacattgcta |
317 |
Q |
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| T |
9486038 |
accaaatggcttctttgaaagtgtaagttgcacccctggatcatggtgggtacaagaagcatgtaataacaatgaattattcacacactgcacattgcta |
9485939 |
T |
|
| Q |
318 |
ttcatgtacacaccaaccattggtggtgaagatattgttcttactttcttactttgatcatcatagcctttgatctttaaattttccattttgtgaagtt |
417 |
Q |
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| T |
9485938 |
ttcatgtacacaccaaccattggtggtgaagatattgttcttactttcttactttgatcatcatagcctttgatctttaaattttccattttgtgaagtt |
9485839 |
T |
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| Q |
418 |
gatttggnnnnnnnctagtttggattatttccatataagcacctttg |
464 |
Q |
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| T |
9485838 |
gatttggttttttcctagtttggattattttcatacaagcacctttg |
9485792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 325
Target Start/End: Complemental strand, 48961658 - 48961543
Alignment:
| Q |
210 |
tagcctttaccaaatggcttctttgaaagtgtaagttgcacccctggatcatggtgggtacaagaagcatgtaataacaatgaattattcacacactgca |
309 |
Q |
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||||||| |||||||||||||||||| || | ||| |||| ||||||||||| |||| ||||||||||| | | | || ||||| |||||||| | |
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| T |
48961658 |
tagccttcaccaaatggcttctttgagagagaaagacgcactcctggatcatgatgggagcaagaagcatgatacagtagagagttattgacacactgta |
48961559 |
T |
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| Q |
310 |
cattgctattcatgta |
325 |
Q |
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| T |
48961558 |
cattgctgttcatgta |
48961543 |
T |
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