View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19506_high_3 (Length: 472)
Name: NF19506_high_3
Description: NF19506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19506_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 11 - 455
Target Start/End: Complemental strand, 38814125 - 38813681
Alignment:
| Q |
11 |
cgaagaatattaagcagtgatttgtggacagaatcatatgcccaactctcaaagcaattgaaaccatttaggtgaatgataagacacgagtgtccatcac |
110 |
Q |
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| T |
38814125 |
cgaagaaaattaagcagtgatttgtggacagaatcatatgcccaactctcaaagcaattgaaaccatttaggtgaatgataagacacgagtgtccatcac |
38814026 |
T |
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| Q |
111 |
agagctgcagggttgcacatttggatttggtaactgttcctggctccgtgccatgtaacagaagccattcagcatcaagcccgataactttggttcgatg |
210 |
Q |
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| T |
38814025 |
agaactgcagtgttgcacatttggatttggtaactgttcctggctccgtgccatgtaacagaagccattcagcatcaagcccgataactttggttcgatg |
38813926 |
T |
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| Q |
211 |
actgttagaacgatgcaagaacgatcttatatgattctcaatcttttgctcatcggatgttgctcgagtcttgatgtgtactccattcagctcaaacgat |
310 |
Q |
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| T |
38813925 |
attgttagaacgatgcaagaacgatcttatatgattctcaatcttttgctcatcggatgttgctctggtcttgatgtgtactccattcagctcaaacgat |
38813826 |
T |
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| Q |
311 |
cccacataacccatgtgtgctgaagaagtttgtaaggtggcaattcaataaagcattgcaagtgatagagagacgaggactatttataggcatataactt |
410 |
Q |
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| T |
38813825 |
cccacataacccatgtgtgctgaagaagtttgtaaggtggcaattcaataaagcattgcaagtgatagagagacaaggactatttataggcatataactt |
38813726 |
T |
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| Q |
411 |
gcggtaagctgaaaaggcatagtaatcgagagtagaatctggaaa |
455 |
Q |
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| T |
38813725 |
gcggtaagctgaaaaggcatagtaatcgagagtagaatctggaaa |
38813681 |
T |
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