View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19506_high_4 (Length: 438)
Name: NF19506_high_4
Description: NF19506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19506_high_4 |
 | |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0015 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Original strand, 32932412 - 32932837
Alignment:
| Q |
18 |
tcagatgcacggtatctctccctctttctctctgtttcgttacttatccatttatgacatgttcatcttcaacatagccaatctacatctacccacagct |
117 |
Q |
| |
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|||||||||| |||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32932412 |
tcagatgcactgtatctctccctttttctctctgtttcgttacttatccatttataatatgttcatcttcaacatagccaatctacatctacccacagct |
32932511 |
T |
|
| Q |
118 |
atggagtatgtacaatttcattgcaaaacccataaaaataatagaa-------gctgcaattgcaaaggagaacctcaaacaaaagaatgacccattttt |
210 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32932512 |
atggagtat--acaatttcattgcaaaacccataaaaataatagaaaagaatcgctgcaattgcaaaggagaacctcaaacaaaagaatgacccattttt |
32932609 |
T |
|
| Q |
211 |
gaaacccctgtatcaaacccttttcactcttatgtacaagggcaaaaggggaaattgattgactccatatgtcagaggttgagagaatcgatttcaagaa |
310 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32932610 |
gaaacccctgtatcaaacccttttcactcttatgtacaagggcaaaaggggaaattgattgactccatatgtcagaggttgagagaatcgatttcaagaa |
32932709 |
T |
|
| Q |
311 |
gctagagattggagcttctgctaaaattgattctgaagagcaaaacgtgcgatgatagtagagaggttgagataaccaaacacaggaaaatcacttttaa |
410 |
Q |
| |
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| ||||||||||||||||| |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32932710 |
gttagagattggagcttctcctaaaattgattatgaaaagcaaaacgtgcgatgatggtagagaggttgagataaccaaacacaggaaaatcacttttaa |
32932809 |
T |
|
| Q |
411 |
atggatgaacgtacgttgttgctttctc |
438 |
Q |
| |
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||||| |||| |||||| |||||||||| |
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| T |
32932810 |
atggaggaacatacgtttttgctttctc |
32932837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 29 - 438
Target Start/End: Original strand, 43089300 - 43089717
Alignment:
| Q |
29 |
gtatctctccctctttctctctgtttcgttacttatccatttat-gacatgttcatcttcaacatagccaatctacatctacccac-agctatggagtat |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| | | | ||||||||| |
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| T |
43089300 |
gtatctctccctctttctctctgtttcgttacttatccatttattgacatgttcatcttcaacatggccgatctacatctatgatctatccatggagtat |
43089399 |
T |
|
| Q |
127 |
gtacaatttcattgcaaaaccca---taaaaataata--gaagc--tgcaattgcaaaggagaacctcaaacaaaagaatgacccatttttgaaacccct |
219 |
Q |
| |
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||||||||||||||||||| || ||| ||||| | ||| | ||||| |||||| |||||| ||||| ||| |||||||| |||||| |||||||| |
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|
| T |
43089400 |
gtacaatttcattgcaaaattcacagtaacaataaaaaagaatcactgcaactgcaaatgagaacatcaaataaaggaatgaccaatttttaaaacccct |
43089499 |
T |
|
| Q |
220 |
gtatcaaacccttttcactcttatgtacaagggcaaaaggggaaattgattgactccatatgtcagaggttgagagaatcgatttcaagaagctagagat |
319 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
43089500 |
gtatcaaacccttttcactcgtatgtaaaagggcaaaaggggaaattggttgactccatatgtc--aggttgaaagaatcgatttcaagaagctagagat |
43089597 |
T |
|
| Q |
320 |
tggagcttctgctaaaattgattctgaagagcaaaacgtgcgatgatagtagagaggttga-gataaccaaacacaggaaaatcacttttaaatggatga |
418 |
Q |
| |
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|| |||||| |||||||||||| |||| || |||||||||| |||| ||||||||||||| || ||||||||||| |||||||||||| | |||| || |
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| T |
43089598 |
tgtagcttcacctaaaattgattatgaaaaggaaaacgtgcggtgatggtagagaggttgaggagaaccaaacacaaaaaaatcacttttgactggacga |
43089697 |
T |
|
| Q |
419 |
acgtacgttgttgctttctc |
438 |
Q |
| |
|
||| ||||| ||| |||||| |
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| T |
43089698 |
acgcacgtttttgatttctc |
43089717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 362
Target Start/End: Complemental strand, 52736191 - 52736123
Alignment:
| Q |
294 |
agaatcgatttcaagaagctagagattggagcttctgctaaaattgattctgaagagcaaaacgtgcga |
362 |
Q |
| |
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||||||||||||||||||||||||| | ||||||| ||||| |||||||||| | ||||||||||| |
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| T |
52736191 |
agaatcgatttcaagaagctagagagagcagcttctttaaaaatcgattctgaaggggaaaacgtgcga |
52736123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 53 - 435
Target Start/End: Original strand, 48246972 - 48247360
Alignment:
| Q |
53 |
ttcgttacttatccatttat-gacatgttcatcttcaacatagccaatctacatctacccacagctatggagtatgtacaatttcattgcaaaacccata |
151 |
Q |
| |
|
||||||||||||| |||||| ||||||||| |||||||||| |||||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||| |
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| T |
48246972 |
ttcgttacttatcaatttattgacatgttcgtcttcaacatggccaatctacatctacccactgctatggggtatatacaatttcattgtaaaacccata |
48247071 |
T |
|
| Q |
152 |
aaaataatagaag-------ctgcaattgcaaaggagaacctcaaacaaaagaatgacccatttttgaaacccctgtatcaaacccttttcactcttatg |
244 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||| ||||||||||| |||| |
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| T |
48247072 |
aaaataatagaaaagaatcactgcaactgcaaaggagaacctcaaacaaaagaatgacacattttttaaacctttgtatcaaaaccttttcactcgtatg |
48247171 |
T |
|
| Q |
245 |
tacaagggcaaaaggggaaattgattgactccatatgtcagaggttgagagaatcgatttcaagaagctagagattggagcttctgctaaaattgattct |
344 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |
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|
| T |
48247172 |
tacaagggaaaaaggggaaattgattgactccttatgtc--aggttgagagaatcgatttcaagaagttagagattggagcttctcctaaaattaatttc |
48247269 |
T |
|
| Q |
345 |
gaagagcaaaacgtgcgatgatagtagagaggttga-gataaccaaacacaggaaaatcacttttaaatggatgaacgtacgttgttgcttt |
435 |
Q |
| |
|
||| |||||||| | | ||| | | |||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||| |
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|
| T |
48247270 |
gaaaagcaaaac-tacaatgttgttggagaggttgaggataaccaaacacaagaaaatcacttttaaatagatgaacgcacgtttttgcttt |
48247360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 170 - 406
Target Start/End: Complemental strand, 40351941 - 40351698
Alignment:
| Q |
170 |
attgcaaaggagaacctcaaacaaaagaatgacccatttttgaaacccctgtatcaaacc--------cttttcactcttatgtacaagggcaaaagggg |
261 |
Q |
| |
|
||||||||||| |||||||||| || |||| ||| |||||||||||||| ||||||| | ||||||| |||| |||||||||||||| |
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|
| T |
40351941 |
attgcaaaggataacctcaaaccaaggaattaccgatttttgaaaccccacaatcaaacttgtaaattcctttcacttgtatgcacaagggcaaaaggat |
40351842 |
T |
|
| Q |
262 |
aaattgattgactccatatgtcagaggttgagagaatcgatttcaagaagctagagatt-ggagcttctgctaaaattgattctgaagagcaaaacgtgc |
360 |
Q |
| |
|
|||||||| |||||| | ||| | |||||||||||||| |||||| |||||| ||||| ||||||||| | |||||||||| | || |||||||||||| |
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|
| T |
40351841 |
aaattgatagactccgtgtgt--gtggttgagagaatcgctttcaaaaagcta-agattcggagcttctcccaaaattgattatcaaaagcaaaacgtgc |
40351745 |
T |
|
| Q |
361 |
gatgatagtagagaggttga-gataaccaaacacaggaaaatcactt |
406 |
Q |
| |
|
||| ||||||||||||| || || |||||||||||| |||||||||| |
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|
| T |
40351744 |
gataatagtagagaggtggaggagaaccaaacacagtaaaatcactt |
40351698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 29 - 239
Target Start/End: Original strand, 43045519 - 43045740
Alignment:
| Q |
29 |
gtatctctccctctttctctctgtttcgttacttatccatttat-gacatgttcatcttcaacatagccaatctacatctacccacagctatggagtatg |
127 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||| | | ||||||||||||| |
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|
| T |
43045519 |
gtatctctccctctttctctctgtttcattacttatccatttattgacatgttcatcttcaacatggccaatctacatctactcgctgctatggagtatg |
43045618 |
T |
|
| Q |
128 |
tacaatttcattgcaaaaccca---taaaaataatagaa-------gctgcaattgcaaaggagaacctcaaacaaaagaatgacccatttttgaaaccc |
217 |
Q |
| |
|
|||||||||||||||||| || |||||| |||| || ||||||||||||| |||||| ||||| ||| |||||||| ||||||||||||| |
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|
| T |
43045619 |
tacaatttcattgcaaaattcacagtaaaaacaataaaaaagaatcactgcaattgcaaaagagaacatcaaataaaggaatgaccaatttttgaaaccc |
43045718 |
T |
|
| Q |
218 |
ctgtatcaaacccttttcactc |
239 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
43045719 |
ctgtatcaaacccttttcactc |
43045740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 288 - 438
Target Start/End: Original strand, 43045741 - 43045892
Alignment:
| Q |
288 |
gttgagagaatcgatttcaagaagctagagattggagcttctgctaaaattgattctgaagagcaaaacgtgcgatgatagtagagaggttga-gataac |
386 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||| |||||| ||||||||||||||||| || |||||||| | |||| ||||| ||||||| || ||| |
|
|
| T |
43045741 |
gttgaaagaatcgatttcaagaagctatagattgtagcttcacctaaaattgattctgaaaaggaaaacgtggggtgatggtagataggttgaggagaac |
43045840 |
T |
|
| Q |
387 |
caaacacaggaaaatcacttttaaatggatgaacgtacgttgttgctttctc |
438 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| |||| ||||| |||||||||| |
|
|
| T |
43045841 |
caaacacaagaaaatcacttttgaatggataaacgcacgtttttgctttctc |
43045892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 170 - 356
Target Start/End: Complemental strand, 33588396 - 33588213
Alignment:
| Q |
170 |
attgcaaaggagaacctcaaacaaaagaatgacccatttttgaaacccctgtatcaaacccttttcactcttatgtacaagggcaaaaggg-gaaattga |
268 |
Q |
| |
|
|||||||||||| ||||||||| || ||| ||| |||||||||| |||||||||||||| ||| || || || | ||||| |||| || |||||||| |
|
|
| T |
33588396 |
attgcaaaggagcacctcaaactaaggaacgacagatttttgaaagccctgtatcaaaccattt-caatcgtacacaaaagggtaaaaaggagaaattga |
33588298 |
T |
|
| Q |
269 |
ttgactccatatgtcagaggttgagagaatcgatttcaagaagctagagattggagcttctgctaaaattgattctgaagagcaaaac |
356 |
Q |
| |
|
| |||| |||||| ||||||||||||||| ||||||||||||||| ||||||||||| |||||||| ||| |||| ||| |||| |
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|
| T |
33588297 |
tcaactc-atatgt--gaggttgagagaatcaatttcaagaagctaggaattggagcttcacctaaaattaattttgaaaagctaaac |
33588213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 406
Target Start/End: Original strand, 27075170 - 27075329
Alignment:
| Q |
246 |
acaagggcaaaaggggaaattgattgactccatatgtcagaggttgagagaatcgatttcaagaagctagagattggagcttctgctaaaattgattctg |
345 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||| | | ||||| | ||||| |||||| |||||| |||||||||| | || |||||||||| |
|
|
| T |
27075170 |
acaagggcaaaaggataaattgatagactccatactt--gcagttgacataatcgctttcaaaaagctaagaattggagctttgcccaacattgattctg |
27075267 |
T |
|
| Q |
346 |
aagagcaaaacgtgcgatgatagtagagaggttga-gataaccaaacacaggaaaatcactt |
406 |
Q |
| |
|
|| |||||||||||||||||| | ||| ||| || || |||||||||||| |||||||||| |
|
|
| T |
27075268 |
aaaagcaaaacgtgcgatgatgattgaggggtggaggagaaccaaacacagtaaaatcactt |
27075329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 377
Target Start/End: Complemental strand, 64934 - 64805
Alignment:
| Q |
246 |
acaagggcaaaaggggaaattgattgactccatatgtcagaggttgagagaatcgatttcaagaagctagagatt-ggagcttctgctaaaattgattct |
344 |
Q |
| |
|
|||||||||||| | |||||||| |||||||| ||| | ||| |||||||||| |||||| | |||| ||||| ||||||||| | |||||||||| | |
|
|
| T |
64934 |
acaagggcaaaaagataaattgatagactccatgtgt--gtggtcgagagaatcgctttcaaaaggcta-agattcggagcttctcccaaaattgattat |
64838 |
T |
|
| Q |
345 |
gaagagcaaaacgtgcgatgatagtagagaggt |
377 |
Q |
| |
|
||| ||||||| ||| |||||| |||||||||| |
|
|
| T |
64837 |
gaaaagcaaaatgtgtgatgatggtagagaggt |
64805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 65019 - 64971
Alignment:
| Q |
170 |
attgcaaaggagaacctcaaacaaaagaatgacccatttttgaaacccc |
218 |
Q |
| |
|
||||||||||| |||||||||| || |||| ||| |||||||||||||| |
|
|
| T |
65019 |
attgcaaaggataacctcaaaccaaggaattaccgatttttgaaacccc |
64971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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