View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19506_high_5 (Length: 393)
Name: NF19506_high_5
Description: NF19506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19506_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 380
Target Start/End: Complemental strand, 5335839 - 5335476
Alignment:
| Q |
17 |
caggttgaccactagtcggtaaatcaagaagaatgttattcggaagtacagctggaagagcatgtccttccctatgtcgctccattaggtgcagtgcaat |
116 |
Q |
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| T |
5335839 |
caggttgaccactagtcggtaaatcaagaagaatgttattcggaagtacagctggaagagcatgtccttccctgtgtcgctccattaggtgcagtgcaat |
5335740 |
T |
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| Q |
117 |
acaaaactcgttgagagaaagcatgctatcattatcttgatcggataggtcgcaaacctgcttcaaaacatctggaaaacataaaacatggcatgcaaaa |
216 |
Q |
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| T |
5335739 |
acaaaactcgttgagagaaagcatgctatcattatcttgatcggataggtcgcaaacctgcttcaaaacatctggaaaacataaaacatggcatgcaaaa |
5335640 |
T |
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| Q |
217 |
aatgatcagcgaattagctaggcattgaaagttcaagcagaacactagagaagtacaaaaacagagnnnnnnntttaaccatggtccaaacaaaaggaaa |
316 |
Q |
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| T |
5335639 |
aatgatcagcgaattagctaggcattgaaagttcaagcagaacactagaaaagtacaaaaacagagaaaaaaatttaaccatggtccaaacaaaaggaaa |
5335540 |
T |
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| Q |
317 |
tgaagtagataatataccttttggtaatgcccaactaagaaacaagtccctcgcctgttcccct |
380 |
Q |
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| T |
5335539 |
tgaagtagataatataccttttggtagtgcccaactaagaaacaagtccctcgcctgttcccct |
5335476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 31 - 379
Target Start/End: Complemental strand, 43471826 - 43471476
Alignment:
| Q |
31 |
gtcggtaaatcaagaagaatgttattcggaagtacagctggaagagcatgtccttccctatgtcgctccattaggtgcagtgcaatacaaaactcgttga |
130 |
Q |
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| T |
43471826 |
gtcggtatatcaggaagaatgttatttggaagtacacttggaagagcacgtccctccctgtggcgctccattaggtacagtgcaatccaaaactctctga |
43471727 |
T |
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| Q |
131 |
gagaaagcatgctatcattatcttgatcggataggtcgcaaacctgcttcaaaacatctggaaaacataaaacatggcatgcaaaaaatgatcagcgaat |
230 |
Q |
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| |||||||||||||||||||||||||| |||||||| || |||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43471726 |
gtgaaagcatgctatcattatcttgatcagataggtcccagacctgcatcaaaacctctggaaaacataaaacatggcaagcaaaaaatgatcagcgaat |
43471627 |
T |
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| Q |
231 |
tagctaggcattgaaagtt--caagcagaacactagagaagtacaaaaacagagnnnnnnntttaaccatggtccaaacaaaaggaaatgaagtagataa |
328 |
Q |
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||||||| |||||| | || || |||||||| ||||||||| |||||||||| |||| | || |||||||||||||||| |||||||| || |
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| T |
43471626 |
tagctagccattgagaatttacacccagaacaccagagaagtagaaaaacagagaaatcattttactcctgatccaaacaaaaggaaaggaagtagaaaa |
43471527 |
T |
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| Q |
329 |
tataccttttggtaatgcccaactaagaaacaagtccctcgcctgttcccc |
379 |
Q |
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||||||| |||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
43471526 |
tatacctcttggtaattgccaactaagaaacaagttcctcgcctgttcccc |
43471476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 54127756 - 54127699
Alignment:
| Q |
133 |
gaaagcatgctatcattatcttgatcggataggtcgcaaacctgcttcaaaacatctg |
190 |
Q |
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|||||||||||||||||||||||||| |||| ||| || |||| ||| || ||||||| |
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| T |
54127756 |
gaaagcatgctatcattatcttgatcagataagtcccacaccttctttaagacatctg |
54127699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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