View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19506_high_8 (Length: 331)
Name: NF19506_high_8
Description: NF19506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19506_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 19643356 - 19643057
Alignment:
| Q |
16 |
gcagttgcgaagaagcgtgcaaatagcatatttggatcaacatatatagcttcacaacatgtagatcatgaagaagaaagcaaggatgaaacagaagtat |
115 |
Q |
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| T |
19643356 |
gcagttgcgaagaagcgtgcaaatagcatatttggatcaacatatgtagcttcacaacatggagatcatgaagaagaaagcaaggatgaaacagaagtat |
19643257 |
T |
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| Q |
116 |
accatgcagagagggttctacctaatggagattactacaaaggagaatgggctgataacttcccacatgggaaagggaagtacttatggacagatggatg |
215 |
Q |
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| T |
19643256 |
accatgcagagagggttctacccaatggagattactataaaggagaatgggctgataacttcccacatgggaaagggaagtacttatggacagatggatg |
19643157 |
T |
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| Q |
216 |
tatatatgttggagaatggttcaaaggaaaaactatgggaaagggaaggttcacttggccttcagggccagcttatgaaggggagttcaagagtggttat |
315 |
Q |
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| T |
19643156 |
tatatatgttggagaatggttcaaaggaaaaactatgggaaagggaaggttcacttggccttcagggccagcttatgaaggggagttcaagagtggttat |
19643057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 281
Target Start/End: Original strand, 35256503 - 35256645
Alignment:
| Q |
139 |
aatggagattactacaaaggagaatgggctgataacttcccacatgggaaagggaagtacttatggacagatggatgtatatatgttggagaatggttca |
238 |
Q |
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||||| |||||||| | |||| ||||||| || || || |||||||| |||| || || ||||||| ||||| || || || |||||| ||||||||| |
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| T |
35256503 |
aatggtgattactatacaggacaatgggcagaaaattttccacatggagaaggaaaatatctatggacggatgggtgcatgtacgttggacaatggttca |
35256602 |
T |
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| Q |
239 |
aaggaaaaactatgggaaagggaaggttcacttggccttcagg |
281 |
Q |
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| T |
35256603 |
aaggaaaaacaaagggaaaaggtagattcagttggccttcagg |
35256645 |
T |
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