View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19506_low_12 (Length: 249)
Name: NF19506_low_12
Description: NF19506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19506_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 112 - 230
Target Start/End: Original strand, 32933142 - 32933260
Alignment:
| Q |
112 |
aattgatttactctaattcttattgattgaacacgactcaagtcatacatttcaatcacaaacaacaccatgaattgcatgcacaaacgaccaatatatc |
211 |
Q |
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| T |
32933142 |
aattgatttactctaattcttattgattgaacacgactcaagtcatacatttcaatcacaaacaacaccatgaattacatgcacaaacgaccaatatatc |
32933241 |
T |
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| Q |
212 |
tttcaaataaaacatatat |
230 |
Q |
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| T |
32933242 |
ttgcaaataaaacatatat |
32933260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 32932856 - 32932886
Alignment:
| Q |
1 |
ggcttagacatgtcattggtgcacactcaca |
31 |
Q |
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| T |
32932856 |
ggcttagacatgtcattggtgcacactcaca |
32932886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 242
Target Start/End: Complemental strand, 23404817 - 23404726
Alignment:
| Q |
151 |
aagtcatacatttcaatcacaaacaacaccatgaattgcatgcacaaacgaccaatatatctttcaaataaaacatatatttcatattcttc |
242 |
Q |
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| T |
23404817 |
aagtcatgtatttcaattacaaacaacaacatcaactacatgcacaaaccactaatatatattacaaagaatacatatctttcttattcttc |
23404726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 33314395 - 33314461
Alignment:
| Q |
152 |
agtcatacatttcaatcacaaacaacaccatgaattgcatgcacaaacgaccaatatatctttcaaa |
218 |
Q |
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| T |
33314395 |
agtcatatatttcaatcacaaacaacattgtcaactacatgcacaaaccaccaatatatcttacaaa |
33314461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 179
Target Start/End: Original strand, 42421120 - 42421148
Alignment:
| Q |
151 |
aagtcatacatttcaatcacaaacaacac |
179 |
Q |
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| T |
42421120 |
aagtcatacatttcaatcacaaacaacac |
42421148 |
T |
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