View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19506_low_13 (Length: 240)
Name: NF19506_low_13
Description: NF19506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19506_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 52868394 - 52868188
Alignment:
| Q |
19 |
aaacctgaagtccttagttggtctccacgaattattttacttcataatttcctcagctacgaggaatgcgattatcttaggggagttgccctccctcgtc |
118 |
Q |
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| T |
52868394 |
aaacctgaagtccttagttggtctccacgaattattttacttcataacttcctcagctacgaggaatgcgattatcttaggggagttgccctccctcgtc |
52868295 |
T |
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| Q |
119 |
ttaaaatttcaactgtcgtcgatgcaaatacaggaaaaggaatcaagagtgatgtcagaacaagttctggtatgtttttgagtcatgaagagagaaaata |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52868294 |
ttaaaatttcaactgtcgtcgatgcaaatacaggaaaaggaatcaagagtgatgtcagaacaagttctggtatgtttttgagtcatgaagagagaaaata |
52868195 |
T |
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| Q |
219 |
tcctatg |
225 |
Q |
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||||||| |
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| T |
52868194 |
tcctatg |
52868188 |
T |
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