View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19506_low_15 (Length: 208)
Name: NF19506_low_15
Description: NF19506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19506_low_15 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 2522804 - 2523011
Alignment:
| Q |
1 |
ccccctttcaaaattcaaaacttcagttacagcaactcatgtgattgaagagattaggttccaagaatttgaaacccacaaactcttaataaaaggggat |
100 |
Q |
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| T |
2522804 |
ccccctttcaaaattcaaaacttcagttacagcaactcgtgtgattgaagagattaggttccaagaatgtgaaacccacaaactattaataaaaggggat |
2522903 |
T |
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| Q |
101 |
aacaatcaacaaagttctaaattgcataaattcaaaatgtgaaaacttctaataaatggtttgtttgatgaaaaatgaaaaggagaacagagaaaacgat |
200 |
Q |
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| T |
2522904 |
aacaatcaacaaagttctaaattgcataaattcaaaatgtgaaaacttctaataaatggtttgtttgatgaaaagtgaaaaggagaacagagaaaacgat |
2523003 |
T |
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| Q |
201 |
gaaatata |
208 |
Q |
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|||||||| |
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| T |
2523004 |
gaaatata |
2523011 |
T |
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Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 53 - 186
Target Start/End: Original strand, 1768847 - 1768980
Alignment:
| Q |
53 |
attaggttccaagaatttgaaacccacaaactcttaataaaaggggataacaatcaacaaagttctaaattgcataaattcaaaatgtgaaaacttctaa |
152 |
Q |
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| T |
1768847 |
attaggctctaagaatttgaaacccacaaacttttactacaaggggataacgatcaacaaactactaaaatgtaccaattcaaaatgtgaaaacttctaa |
1768946 |
T |
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| Q |
153 |
taaatggtttgtttgatgaaaaatgaaaaggaga |
186 |
Q |
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| T |
1768947 |
caaatggtttgtctgatagaaagtggaaaggaga |
1768980 |
T |
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