View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19506_low_6 (Length: 374)
Name: NF19506_low_6
Description: NF19506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19506_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 354
Target Start/End: Original strand, 18714658 - 18714993
Alignment:
| Q |
19 |
aacacacggtgcaggaggtggttattacatccttctcatcgttacacagtgcgggaggcttacaactttctcaccaacaatggtaacccggtggacaggt |
118 |
Q |
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| T |
18714658 |
aacacacggtgcaggaggtggttattacatccttctcatcgttacacagttcgggaggcttacaactttctcaccaacaatggtaacccggtggacaggt |
18714757 |
T |
|
| Q |
119 |
cgatggtagttgatgtatggcacaagtttatcccttcaaaggtgtctgtttgtggcgcttcctacagaatagattgcccacacgagataatttggtgcgg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
18714758 |
cgatggtagttgatgtatggcacaagtttatcccttcaaaggtgtctgttcgtggcgcttcctacggaatagattgcccacacgagataatttggtgcgg |
18714857 |
T |
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| Q |
219 |
cgacgtgctctgctgatatcagactcggtttgtgtgtttggttgcggtgaaccagaaaccgcatcccatttattttttggttgcaacacttttagtttgc |
318 |
Q |
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| T |
18714858 |
cgacgtgctttgctgatatctgactcggtttgtgtgtttggttgcggtgaaccagaaaccgcatcccatttattttttggttgcaacacttttagtttgc |
18714957 |
T |
|
| Q |
319 |
tttggtcccatgtgttacattggatgggtctttctg |
354 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
18714958 |
tttggtcccatgtgttacattggatgggtctttctg |
18714993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 32 - 159
Target Start/End: Complemental strand, 46610083 - 46609956
Alignment:
| Q |
32 |
ggaggtggttattacatccttctcatcgttacacagtgcgggaggcttacaactttctcaccaacaatggtaacccggtggacaggtcgatggtagttga |
131 |
Q |
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| T |
46610083 |
ggaggtggttactacatccttctcatggttacacggtgcgggaagcttaccactttctcaccaacaacggtaacccggtgtataggtcgatggtagatga |
46609984 |
T |
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| Q |
132 |
tgtatggcacaagtttatcccttcaaag |
159 |
Q |
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| T |
46609983 |
tgtatggcataagtatattccttcaaag |
46609956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 165
Target Start/End: Complemental strand, 6519461 - 6519328
Alignment:
| Q |
32 |
ggaggtggttattacatccttctcatcgttacacagtgcgggaggcttacaactttctcaccaacaatggtaacccggtggacaggtcgatggtagttga |
131 |
Q |
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|||||||| | ||| |||||||| || |||||| |||||||| |||||| ||||||||| |||| |||| |||| |||||| ||||| ||| | ||| |
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| T |
6519461 |
ggaggtggcttttaaatccttctaatggttacaaggtgcgggaagcttactgctttctcacttacaacggtagcccgatggacaagtcgacggtggatga |
6519362 |
T |
|
| Q |
132 |
tgtatggcacaagtttatcccttcaaaggtgtct |
165 |
Q |
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||| ||||| ||| ||| ||||||||||||||| |
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| T |
6519361 |
tgtttggcataagagtattccttcaaaggtgtct |
6519328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 32 - 356
Target Start/End: Original strand, 12237613 - 12237941
Alignment:
| Q |
32 |
ggaggtggttattacatccttctcatcgttacacagtgcgggaggcttacaactttctcaccaacaatggtaacccggtggacaggtcgatggtagttga |
131 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||| |||||| | || |||||||| ||||||||||||| ||||| ||||||| |||||| ||| |
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| T |
12237613 |
ggagatggttattacatccttctcatggttacacagtacgggagtcatatcgttttctcacaaacaatggtaacctggtgggcaggtcgttggtagatga |
12237712 |
T |
|
| Q |
132 |
tgtatggcacaagtttatcccttcaaaggtgtctgttt----gtggcgcttcctacagaatagattgcccacacgagataatttggtgcggcgacgtgct |
227 |
Q |
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||| ||||| |||| ||||||||| ||||| ||| | | ||||||| | || ||| | |||| | || ||||||||||||| | |||||| ||| |
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| T |
12237713 |
tgtgtggcataagtctatcccttcgaaggtatctttgttcgcgtggcgccttctctggaacaaattgtctactagagataatttggttcagcgacgagct |
12237812 |
T |
|
| Q |
228 |
ctgctgatatcagactcggtttgtgtgtttggttgcggtgaaccagaaaccgcatcccatttattttttggttgcaacacttttagtttgctttggtccc |
327 |
Q |
| |
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|||| ||||| || | ||||| |||| ||| |||||| || ||||||| || ||||||||| |||||||| || || || | | |||||||| | |
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| T |
12237813 |
ttgcttatatctcacgctgtttgcgtgtctggctgcggtcaaacagaaactgcggtccatttattctttggttgtaatacgttcaacgtactttggtcgc |
12237912 |
T |
|
| Q |
328 |
atgtgttacattggatgggtctttctgtg |
356 |
Q |
| |
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|||||||||| ||| ||||||| |||||| |
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| T |
12237913 |
atgtgttacaatggttgggtctctctgtg |
12237941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 354
Target Start/End: Original strand, 9594768 - 9594879
Alignment:
| Q |
243 |
tcggtttgtgtgtttggttgcggtgaaccagaaaccgcatcccatttattttttggttgcaacacttttagtttgctttggtcccatgtgttacattgga |
342 |
Q |
| |
|
||||||||||| | ||||||||||||| || |||||| | |||||||||||||| ||||||||| | | |||||||||||| | ||||||||||||||| |
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| T |
9594768 |
tcggtttgtgtatctggttgcggtgaatcaaaaaccgtagcccatttattttttagttgcaacattctcagtttgctttggactcatgtgttacattggt |
9594867 |
T |
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| Q |
343 |
tgggtctttctg |
354 |
Q |
| |
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|| |||| |||| |
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| T |
9594868 |
tgagtctctctg |
9594879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 123
Target Start/End: Original strand, 25720710 - 25720801
Alignment:
| Q |
32 |
ggaggtggttattacatccttctcatcgttacacagtgcgggaggcttacaactttctcaccaacaatggtaacccggtggacaggtcgatg |
123 |
Q |
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||||||||||| || ||||||||||| ||||||| || |||| |||||| |||||| ||||| ||||||||| ||||| ||||||||| |
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| T |
25720710 |
ggaggtggttactagatccttctcatggttacacggttagggaagcttaccgctttcttaccaataatggtaactttgtggataggtcgatg |
25720801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 20122861 - 20122913
Alignment:
| Q |
112 |
gacaggtcgatggtagttgatgtatggcacaagtttatcccttcaaaggtgtc |
164 |
Q |
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||||||||| |||| | |||||| |||||||||||||| || ||||||||||| |
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| T |
20122861 |
gacaggtcgttggttgatgatgtgtggcacaagtttattccctcaaaggtgtc |
20122913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 33412252 - 33412288
Alignment:
| Q |
231 |
ctgatatcagactcggtttgtgtgtttggttgcggtg |
267 |
Q |
| |
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|||||| ||||||||||||||||||| |||||||||| |
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| T |
33412252 |
ctgatagcagactcggtttgtgtgttaggttgcggtg |
33412288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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