View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19507_high_18 (Length: 331)
Name: NF19507_high_18
Description: NF19507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19507_high_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 42714848 - 42714705
Alignment:
| Q |
19 |
aacataatggactgaagttgaactatttaactcaaattttgatccgcgtgagtcatccttctaaaatatccttattatataataattagcttggtggtgg |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
42714848 |
aacataatggactgaagttaaactatttaactcaaattttgatccacgtgagtcatccttctaaaatatccttattatataatgattagtttggtggtgg |
42714749 |
T |
|
| Q |
119 |
gactattttttgatcttctgttatgctgtgttggtctgttatga |
162 |
Q |
| |
|
||||||||||||| || |||| |||||||||| |||||||||| |
|
|
| T |
42714748 |
gactattttttgacctcctgtgttgctgtgttgatctgttatga |
42714705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 3627145 - 3627205
Alignment:
| Q |
50 |
tcaaattttgatccgcgtgagtcatccttctaaaatatccttattatataataattagctt |
110 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||| || ||||||| |||||||| |
|
|
| T |
3627145 |
tcaaattttgatccaagcgagtcatccttctaaaatatctttgccatataatgattagctt |
3627205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 189 - 314
Target Start/End: Original strand, 52955743 - 52955867
Alignment:
| Q |
189 |
gtgcagttttgggtactgctaagttgttcaattttactgattttgtgtccagcttttccagtttttaggagctgttgcgattgaatagtgctgnnnnnnn |
288 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52955743 |
gtgctgttttgggtactgctaaggtgttcaattttactgattttgtgtccagcttttccagtttttaggagctgttgcgattgaatggtgctg-tttttt |
52955841 |
T |
|
| Q |
289 |
atttatggctctgtcgaccgcctttg |
314 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
52955842 |
atttatggctctgtcgaccacctttg |
52955867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 148
Target Start/End: Original strand, 52955686 - 52955745
Alignment:
| Q |
89 |
cttattatataataattagcttggtggtgggactattttttgatcttctgttatgctgtg |
148 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
52955686 |
cttattatataatgattagcttggtggtgggactattttttgaccttctgtgctgctgtg |
52955745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University